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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319219 (66 seq.)
>W1710860006
LMCN01000023
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
201390
201465
+
Ala
CGC
[ENA]
¡û
>W1710861294
LMDM01000045
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
89895
89970
+
Ala
CGC
[ENA]
¡û
>W1710893622
LNEY01000014
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
92924
92999
+
Ala
CGC
[ENA]
¡û
>W1711957351
NBTY01000194
Betaproteobacteria
Caballeronia sordidicola [NBTY]
33656
33581
-
Ala
CGC
[ENA]
¡û
>C171063574
CP017561
Betaproteobacteria
Paraburkholderia sprentiae WSM5005 [CP017561, CP017562]
2693283
2693208
-
Ala
CGC
-
¡û
>W131166908
ARCV01000003
Betaproteobacteria
Methyloversatilis thermotolerans NVD [ARCV]
204447
204372
-
Ala
CGC
[ENA]
¡û
>W131167017
ARCY01000011
Betaproteobacteria
Paraburkholderia tuberum WSM4176 [ARCY]
547642
547717
+
Ala
CGC
[ENA]
¡û
>W131174755
ARIS01000058
Betaproteobacteria
Thiomonas sp. FB-6 [ARIS]
46752
46827
+
Ala
CGC
[ENA]
¡û
>W131186126
ARVV01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ18-153 [ARVV]
2367048
2366973
-
Ala
CGC
[ENA]
¡û
>WENV180019144
FTBI01000203
[FTBI] metagenome; soil
301
226
-
Ala
CGC
[ENA]
¢þ
>WENV180019189
FTBI01001844
[FTBI] metagenome; soil
1860
1785
-
Ala
CGC
[ENA]
¢þ
>WENV180272648
OBEQ012401276
[OBEQ] groundwater metagenome; groundwater
578
653
+
Ala
CGC
[ENA]
¢þ
>WENV180355704
OBNI01024975
[OBNI] sediment metagenome; sediment
104
179
+
Ala
CGC
[ENA]
¢þ
>WENV181385318
OFRI01064937
[OFRI] wastewater metagenome; Exp Tend VB 90WW
136
61
-
Ala
CGC
[ENA]
¢þ
>WENV181402100
OFTY01000114
[OFTY] sludge metagenome; sludge
68334
68259
-
Ala
CGC
[ENA]
¢þ
>W141149801
AWZV01000011
Betaproteobacteria
Burkholderia sp. WSM2232 [AWZV]
213549
213474
-
Ala
CGC
[ENA]
¡û
>W141152110
AXBN01000095
Betaproteobacteria
Paraburkholderia sprentiae WSM5005 [AXBN]
296041
296116
+
Ala
CGC
[ENA]
¡û
>W141207228
AZND01000191
Betaproteobacteria
Methylibium sp. T29 [AZND]
450
525
+
Ala
CGC
[ENA]
¡û
>W141214266
AZSN01000185
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
5988
5913
-
Ala
CGC
[ENA]
¡û
>W141267670
CCNS01000082
Betaproteobacteria
Caballeronia glathei [CCNS]
27980
27905
-
Ala
CGC
[ENA]
¡û
>C181083560
CP023522
Betaproteobacteria
Burkholderia gladioli pv. gladioli FDAARGOS_389 [CP023522, CP023523]
2717500
2717425
-
Ala
CGC
-
¡û
>C181108985
CP024934
Betaproteobacteria
Paraburkholderia graminis PHS1 [CP024934, CP024935]
236867
236942
+
Ala
CGC
-
¡û
>C181109099
CP024937
Betaproteobacteria
Paraburkholderia hospita mHSR1 [CP024937, CP024938, CP024939]
379359
379284
-
Ala
CGC
-
¡û
>C191064748
CP029606
Betaproteobacteria
Methylibium sp. Pch-M [CP029606]
2897300
2897225
-
Ala
CGC
-
¡û
>W141620086
JJMR01000112
Betaproteobacteria
Burkholderia sp. A1 [JJMR]
14061
13986
-
Ala
CGC
[ENA]
¡û
>W1910664497
MCAS01000028
Betaproteobacteria
Paraburkholderia fungorum ES3-20 [MCAS]
57729
57654
-
Ala
CGC
[ENA]
¡û
>W1910822033
MWMK01000002
Betaproteobacteria
Paraburkholderia strydomiana WK1.1f [MWMK]
76360
76285
-
Ala
CGC
[ENA]
¡û
>W1910822034
MWMK01000002
Betaproteobacteria
Paraburkholderia strydomiana WK1.1f [MWMK]
62395
62320
-
Ala
CGC
[ENA]
¡û
>W1911497943
OCSU01000002
Betaproteobacteria
Caballeronia arationis OK806 [OCSU]
3151106
3151031
-
Ala
CGC
[ENA]
¡û
>W1911498100
OCSX01000001
Betaproteobacteria
Burkholderia sp. D7 [OCSX]
495080
495155
+
Ala
CGC
[ENA]
¡û
>W1911775031
QXMG01000056
Betaproteobacteria
Caldimonas tepidiphila YIM 730274 [QXMG]
34329
34404
+
Ala
CGC
[ENA]
¡û
>W1810005521
BFBP01000025
Betaproteobacteria
Azospira sp. I13 [BFBP]
10565
10490
-
Ala
CGC
[ENA]
¡û
>W1810081382
PEOG01000097
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
2224
2299
+
Ala
CGC
[ENA]
¡û
>W1810255028
PQII01000007
Betaproteobacteria
Burkholderia gladioli Coa14 [PQII]
243740
243815
+
Ala
CGC
[ENA]
¡û
>W1810352556
PVFX01000006
Betaproteobacteria
Burkholderia gladioli AU16341 [PVFX]
64400
64475
+
Ala
CGC
[ENA]
¡û
>W1810354536
PVHI01000026
Betaproteobacteria
Burkholderia gladioli AU30473 [PVHI]
36963
36888
-
Ala
CGC
[ENA]
¡û
>W1810356662
PVNC01000002
Betaproteobacteria
Paraburkholderia sp. BL18I3N2 [PVNC]
286230
286155
-
Ala
CGC
[ENA]
¡û
>W1810477178
QAOP01000010
Betaproteobacteria
Paraburkholderia sp. GV072 [QAOP]
125662
125737
+
Ala
CGC
[ENA]
¡û
>W1810513943
QBUB01000014
Betaproteobacteria
Paraburkholderia sp. GV068 [QBUB]
180931
180856
-
Ala
CGC
[ENA]
¡û
>C151002225
AP014576
Betaproteobacteria
Burkholderia sp. RPE67 [AP014576, AP014577, AP014578]
3028377
3028452
+
Ala
CGC
-
¡û
>W11114410
ADDK02000001
Betaproteobacteria
Azospira oryzae PS [ADDK]
870771
870696
-
Ala
CGC
[ENA]
¡û
>W1511345613
JRGO01000082
Betaproteobacteria
Burkholderia gladioli UCD-UG_CHAPALOTE [JRGO]
24850
24925
+
Ala
CGC
[ENA]
¡û
>W1511361440
JSBM01000065
Betaproteobacteria
Caballeronia zhejiangensis CEIB S4-3 [JSBM]
134906
134981
+
Ala
CGC
[ENA]
¡û
>W1511398501
JTDQ01000010
Betaproteobacteria
Burkholderia glumae NCPPB 3923 [JTDQ]
19189
19114
-
Ala
CGC
[ENA]
¡û
>W1511433187
JUHA01000005
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
50562
50637
+
Ala
CGC
[ENA]
¡û
>W1511584616
LAVN01000009
Betaproteobacteria
Burkholderia gladioli SN82F6 [LAVN]
326075
326150
+
Ala
CGC
[ENA]
¡û
>W1511657032
LEKY01000005
Betaproteobacteria
Burkholderia gladioli NGJ1 [LEKY]
246294
246369
+
Ala
CGC
[ENA]
¡û
>W1511681948
LFJJ01000274
Betaproteobacteria
Candidatus Burkholderia verschuerenii verschuerenii UZHbot4 [LFJJ]
14491
14416
-
Ala
CGC
[ENA]
¡û
>W1511683405
LFKV01000002
Betaproteobacteria
Candidatus Paraburkholderia kirkii kirkii UZHbot2 [LFKV]
33271
33196
-
Ala
CGC
[ENA]
¡û
>W11162821
AFHG01000032
Betaproteobacteria
Methyloversatilis universalis FAM5 [AFHG]
31089
31164
+
Ala
CGC
[ENA]
¡û
>C121006981
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
87108
87033
-
Ala
CGC
[Ensembl]
¡û
>C161029944
CP010951
Betaproteobacteria
Ramlibacter tataouinensis 5-10 [CP010951]
3938434
3938359
-
Ala
CGC
[Ensembl]
¡û
>C161065028
CP014028
Betaproteobacteria
Achromobacter xylosoxidans FDAARGOS_150 [CP014028]
5348947
5348872
-
Ala
CGC
-
¡û
>W1610206041
FCNW02000006
Betaproteobacteria
Caballeronia humi [FCNW]
226414
226489
+
Ala
CGC
[ENA]
¡û
>W1610206136
FCNY02000001
Betaproteobacteria
Caballeronia cordobensis [FCNY]
570728
570653
-
Ala
CGC
[ENA]
¡û
>W1610206397
FCOD02000003
Betaproteobacteria
Caballeronia turbans LMG 29316 [FCOD]
162626
162701
+
Ala
CGC
[ENA]
¡û
>W1610538812
JRZC01000011
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRZC]
15713
15788
+
Ala
CGC
[ENA]
¡û
>W1610722352
LMCN01000023
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
201390
201465
+
Ala
CGC
[ENA]
¡û
>W1610723640
LMDM01000045
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
89895
89970
+
Ala
CGC
[ENA]
¡û
>W1610753888
LNEY01000014
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
92924
92999
+
Ala
CGC
[ENA]
¡û
>W1710207334
FCNW02000006
Betaproteobacteria
Caballeronia humi [FCNW]
226414
226489
+
Ala
CGC
[ENA]
¡û
>W1710542861
FNZM01000005
Betaproteobacteria
Paraburkholderia tropica [FNZM]
398819
398894
+
Ala
CGC
[ENA]
¡û
>W1710575439
FOZE01000001
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
1589804
1589729
-
Ala
CGC
[ENA]
¡û
>W1710595205
FSRU01000002
Betaproteobacteria
Paraburkholderia phenazinium [FSRU]
2959655
2959580
-
Ala
CGC
[ENA]
¡û
>W1710608306
FXAT01000003
Betaproteobacteria
Paraburkholderia susongensis [FXAT]
322149
322074
-
Ala
CGC
[ENA]
¡û
>W1710641719
JRZC01000011
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRZC]
15713
15788
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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