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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319301 (12 seq.)
>W1710996590
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1213288
1213364
+
Arg
ACG
[ENA]
¡û
>C025346
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
839535
839611
+
Arg
ACG
[Ensembl]
¡û
>WENV170575709
FPHJ01000053
[FPHJ] hydrothermal vent metagenome genome assembly, contig: NODE_9.; water
3800
3724
-
Arg
ACG
[ENA]
¢þ
>WENV170779588
LZQQ01000073
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
13971
13895
-
Arg
ACG
[ENA]
¢þ
>WENV170779712
LZQR01000038
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
7118
7042
-
Arg
ACG
[ENA]
¢þ
>C191011675
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
2056499
2056423
-
Arg
ACG
-
¡û
>C191084373
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
871319
871395
+
Arg
ACG
-
¡û
>C191098459
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
2022368
2022292
-
Arg
ACG
-
¡û
>C191098460
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
2022215
2022139
-
Arg
ACG
-
¡û
>C191134028
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
929685
929761
+
Arg
ACG
-
¡û
>W141776923
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
87138
87214
+
Arg
ACG
[ENA]
¡û
>W1610851247
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1213288
1213364
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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