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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319359 (95 seq.)
>C171060570
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
2727344
2727269
-
Ala
CGC
-
¡û
>C006599
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
3098150
3098078
-
Ala
CGC
[Ensembl]
¡û
>C016749
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
2328009
2327937
-
Ala
CGC
[Ensembl]
¡û
>w018052
AASE01000023
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
33218
33295
+
Ala
CGC
[ENA]
¡û
>w007169
AAIJ01000010
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
42123
42200
+
Ala
CGC
[ENA]
¡û
>WENV181233239
OFES01000025
[OFES] coral metagenome; NA
13736
13663
-
Ala
CGC
[ENA]
¢þ
>WENV181303850
OFHR01000008
[OFHR] coral metagenome; NA
72460
72533
+
Ala
CGC
[ENA]
¢þ
>WENV181303876
OFHR01000303
[OFHR] coral metagenome; NA
1538
1611
+
Ala
CGC
[ENA]
¢þ
>C08003651
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
2671394
2671319
-
Ala
CGC
[Ensembl]
¡û
>C08003604
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
2251634
2251559
-
Ala
CGC
[Ensembl]
¡û
>C08007707
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
2967188
2967113
-
Ala
CGC
[Ensembl]
¡û
>WENV183812098
PYLN01000013
[PYLN] freshwater metagenome; meromictic lake
1040
966
-
Ala
CGC
[ENA]
¢þ
>W09102639
AAIB01000003
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
45512
45439
-
Ala
CGC
[ENA]
¡û
>SRA1017657
SRR035082.176058
454 Sequencing (SRP001803)
364
291
-
Ala
CGC
[SRA]
>SRA1019915
SRR035083.20818
454 Sequencing (SRP001804)
260
187
-
Ala
CGC
[SRA]
>SRA1019973
SRR035083.33052
454 Sequencing (SRP001804)
173
100
-
Ala
CGC
[SRA]
>SRA1019983
SRR035083.36548
454 Sequencing (SRP001804)
407
334
-
Ala
CGC
[SRA]
>SRA1020033
SRR035083.44763
454 Sequencing (SRP001804)
409
336
-
Ala
CGC
[SRA]
>SRA1020171
SRR035083.66051
454 Sequencing (SRP001804)
415
342
-
Ala
CGC
[SRA]
>SRA1020191
SRR035083.71157
454 Sequencing (SRP001804)
232
159
-
Ala
CGC
[SRA]
>SRA1020195
SRR035083.71815
454 Sequencing (SRP001804)
231
158
-
Ala
CGC
[SRA]
>SRA1020337
SRR035083.98455
454 Sequencing (SRP001804)
91
18
-
Ala
CGC
[SRA]
>SRA1020411
SRR035083.110922
454 Sequencing (SRP001804)
355
428
+
Ala
CGC
[SRA]
>SRA1020427
SRR035083.113444
454 Sequencing (SRP001804)
396
323
-
Ala
CGC
[SRA]
>SRA1020442
SRR035083.116165
454 Sequencing (SRP001804)
161
88
-
Ala
CGC
[SRA]
>SRA1020583
SRR035083.138027
454 Sequencing (SRP001804)
161
88
-
Ala
CGC
[SRA]
>SRA1020594
SRR035083.138754
454 Sequencing (SRP001804)
353
426
+
Ala
CGC
[SRA]
>SRA1020617
SRR035083.141262
454 Sequencing (SRP001804)
225
298
+
Ala
CGC
[SRA]
>SRA1020645
SRR035083.145960
454 Sequencing (SRP001804)
357
284
-
Ala
CGC
[SRA]
>SRA1020701
SRR035083.153765
454 Sequencing (SRP001804)
287
360
+
Ala
CGC
[SRA]
>SRA1020737
SRR035083.157604
454 Sequencing (SRP001804)
161
88
-
Ala
CGC
[SRA]
>SRA1020847
SRR035083.172645
454 Sequencing (SRP001804)
354
427
+
Ala
CGC
[SRA]
>SRA1020930
SRR035083.186849
454 Sequencing (SRP001804)
432
359
-
Ala
CGC
[SRA]
>SRA1020931
SRR035083.186926
454 Sequencing (SRP001804)
91
18
-
Ala
CGC
[SRA]
>SRA1020937
SRR035083.187929
454 Sequencing (SRP001804)
353
280
-
Ala
CGC
[SRA]
>SRA1020952
SRR035083.189673
454 Sequencing (SRP001804)
368
295
-
Ala
CGC
[SRA]
>SRA1020989
SRR035083.194011
454 Sequencing (SRP001804)
366
439
+
Ala
CGC
[SRA]
>SRA1021011
SRR035083.197487
454 Sequencing (SRP001804)
226
299
+
Ala
CGC
[SRA]
>SRA1021141
SRR035083.213877
454 Sequencing (SRP001804)
90
17
-
Ala
CGC
[SRA]
>SRA1021250
SRR035083.228714
454 Sequencing (SRP001804)
468
395
-
Ala
CGC
[SRA]
>SRA1021309
SRR035083.239750
454 Sequencing (SRP001804)
367
294
-
Ala
CGC
[SRA]
>SRA1021323
SRR035083.242078
454 Sequencing (SRP001804)
91
18
-
Ala
CGC
[SRA]
>SRA1021372
SRR035083.251973
454 Sequencing (SRP001804)
345
418
+
Ala
CGC
[SRA]
>SRA1021428
SRR035083.257170
454 Sequencing (SRP001804)
121
48
-
Ala
CGC
[SRA]
>SRA1021476
SRR035083.263593
454 Sequencing (SRP001804)
219
146
-
Ala
CGC
[SRA]
>SRA1021517
SRR035083.268499
454 Sequencing (SRP001804)
93
166
+
Ala
CGC
[SRA]
>SRA1021540
SRR035083.270836
454 Sequencing (SRP001804)
147
220
+
Ala
CGC
[SRA]
>SRA1021591
SRR035083.277054
454 Sequencing (SRP001804)
346
419
+
Ala
CGC
[SRA]
>SRA1021646
SRR035083.286908
454 Sequencing (SRP001804)
140
67
-
Ala
CGC
[SRA]
>SRA1021747
SRR035083.301374
454 Sequencing (SRP001804)
219
146
-
Ala
CGC
[SRA]
>SRA1021787
SRR035083.309052
454 Sequencing (SRP001804)
92
165
+
Ala
CGC
[SRA]
>SRA1021850
SRR035083.317518
454 Sequencing (SRP001804)
91
18
-
Ala
CGC
[SRA]
>SRA1021926
SRR035083.328684
454 Sequencing (SRP001804)
356
429
+
Ala
CGC
[SRA]
>SRA1021951
SRR035083.331434
454 Sequencing (SRP001804)
7
80
+
Ala
CGC
[SRA]
>SRA1021980
SRR035083.334108
454 Sequencing (SRP001804)
368
295
-
Ala
CGC
[SRA]
>SRA1022092
SRR035083.351709
454 Sequencing (SRP001804)
93
166
+
Ala
CGC
[SRA]
>SRA1022109
SRR035083.354792
454 Sequencing (SRP001804)
355
428
+
Ala
CGC
[SRA]
>SRA1022159
SRR035083.360933
454 Sequencing (SRP001804)
96
23
-
Ala
CGC
[SRA]
>SRA1022222
SRR035083.370023
454 Sequencing (SRP001804)
90
17
-
Ala
CGC
[SRA]
>SRA1022284
SRR035083.381327
454 Sequencing (SRP001804)
91
18
-
Ala
CGC
[SRA]
>SRA1022400
SRR035083.400613
454 Sequencing (SRP001804)
354
427
+
Ala
CGC
[SRA]
>SRA1022641
SRR035083.436312
454 Sequencing (SRP001804)
348
421
+
Ala
CGC
[SRA]
>SRA1022643
SRR035083.436362
454 Sequencing (SRP001804)
349
422
+
Ala
CGC
[SRA]
>SRA1022669
SRR035083.439806
454 Sequencing (SRP001804)
188
115
-
Ala
CGC
[SRA]
>SRA1022737
SRR035083.451402
454 Sequencing (SRP001804)
318
245
-
Ala
CGC
[SRA]
>SRA1022760
SRR035083.455055
454 Sequencing (SRP001804)
419
346
-
Ala
CGC
[SRA]
>SRA1022862
SRR035083.475089
454 Sequencing (SRP001804)
22
95
+
Ala
CGC
[SRA]
>SRA1022926
SRR035083.488533
454 Sequencing (SRP001804)
190
117
-
Ala
CGC
[SRA]
>SRA1023014
SRR035083.504612
454 Sequencing (SRP001804)
189
116
-
Ala
CGC
[SRA]
>SRA1023037
SRR035083.510028
454 Sequencing (SRP001804)
317
244
-
Ala
CGC
[SRA]
>SRA1023040
SRR035083.510725
454 Sequencing (SRP001804)
96
23
-
Ala
CGC
[SRA]
>SRA1038005
SRR035090.232772
454 Sequencing (SRP001811)
294
221
-
Ala
CGC
[SRA]
>SRA1038013
SRR035090.233813
454 Sequencing (SRP001811)
351
278
-
Ala
CGC
[SRA]
>SRA1038220
SRR035090.266931
454 Sequencing (SRP001811)
258
331
+
Ala
CGC
[SRA]
>SRA1038265
SRR035090.276523
454 Sequencing (SRP001811)
323
397
+
Ala
CGC
[SRA]
>SRA1038309
SRR035090.285125
454 Sequencing (SRP001811)
235
308
+
Ala
CGC
[SRA]
>SRA1038417
SRR035090.300502
454 Sequencing (SRP001811)
91
164
+
Ala
CGC
[SRA]
>SRA1038508
SRR035090.318188
454 Sequencing (SRP001811)
84
11
-
Ala
CGC
[SRA]
>SRA1038560
SRR035090.327795
454 Sequencing (SRP001811)
189
262
+
Ala
CGC
[SRA]
>SRA1038674
SRR035090.347746
454 Sequencing (SRP001811)
236
309
+
Ala
CGC
[SRA]
>SRA1038700
SRR035090.351975
454 Sequencing (SRP001811)
206
279
+
Ala
CGC
[SRA]
>SRA1038733
SRR035090.356411
454 Sequencing (SRP001811)
201
274
+
Ala
CGC
[SRA]
>SRA1038786
SRR035090.365484
454 Sequencing (SRP001811)
229
302
+
Ala
CGC
[SRA]
>SRA1038971
SRR035090.402720
454 Sequencing (SRP001811)
133
206
+
Ala
CGC
[SRA]
>SRA1039016
SRR035090.407876
454 Sequencing (SRP001811)
120
193
+
Ala
CGC
[SRA]
>SRA1039042
SRR035090.414918
454 Sequencing (SRP001811)
294
221
-
Ala
CGC
[SRA]
>SRA1039093
SRR035090.423351
454 Sequencing (SRP001811)
105
178
+
Ala
CGC
[SRA]
>SRA1039136
SRR035090.430142
454 Sequencing (SRP001811)
260
333
+
Ala
CGC
[SRA]
>SRA1039154
SRR035090.433143
454 Sequencing (SRP001811)
235
308
+
Ala
CGC
[SRA]
>SRA1039253
SRR035090.453036
454 Sequencing (SRP001811)
232
305
+
Ala
CGC
[SRA]
>SRA1039548
SRR035090.514031
454 Sequencing (SRP001811)
94
21
-
Ala
CGC
[SRA]
>SRA1039670
SRR035090.541144
454 Sequencing (SRP001811)
126
199
+
Ala
CGC
[SRA]
>SRA1039672
SRR035090.541467
454 Sequencing (SRP001811)
195
122
-
Ala
CGC
[SRA]
>SRA1052333
SRR035098.183483
454 Sequencing (SRP001819)
322
395
+
Ala
CGC
[SRA]
>SRA1052359
SRR035098.187453
454 Sequencing (SRP001819)
386
313
-
Ala
CGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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