This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319374 (50 seq.)
>W1710979360
LPNY01000139
Campylobacterota
Arcobacter sp. EP1 [LPNY]
152350
152274
-
Asp
GTC
[ENA]
¡û
>WENV183710813
PDWI01053886
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
110
186
+
Asp
GTC
[ENA]
¢þ
>WENV183710816
PDWI01053886
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
394
470
+
Asp
GTC
[ENA]
¢þ
>WENV183712059
PDWI01087276
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2350
2274
-
Asp
GTC
[ENA]
¢þ
>WENV183715141
PDWI01223422
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1203
1127
-
Asp
GTC
[ENA]
¢þ
>WENV183721139
PDWJ01056412
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
113
189
+
Asp
GTC
[ENA]
¢þ
>WENV183721736
PDWJ01083259
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1249
1325
+
Asp
GTC
[ENA]
¢þ
>WENV170635476
JDSF01030745
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
179
255
+
Asp
GTC
[ENA]
¢þ
>WENV170646511
JQGR01017733
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
183
259
+
Asp
GTC
[ENA]
¢þ
>WENV170780518
MAAB01003772
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1177
1101
-
Asp
GTC
[ENA]
¢þ
>WENV170780636
MAAB01010296
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2198
2122
-
Asp
GTC
[ENA]
¢þ
>WENV170780697
MAAB01014312
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2519
2443
-
Asp
GTC
[ENA]
¢þ
>WENV170780796
MAAB01022570
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
442
518
+
Asp
GTC
[ENA]
¢þ
>C191084514
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
553086
553010
-
Asp
GTC
-
¡û
>C191084518
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552742
552666
-
Asp
GTC
-
¡û
>C191084522
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552381
552305
-
Asp
GTC
-
¡û
>C191084683
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
653117
653041
-
Asp
GTC
-
¡û
>C191084687
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
652714
652638
-
Asp
GTC
-
¡û
>C191084691
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
652291
652215
-
Asp
GTC
-
¡û
>C191147218
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
539807
539731
-
Asp
GTC
-
¡û
>C191147222
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
539450
539374
-
Asp
GTC
-
¡û
>W1911413064
NWVW01000011
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
47029
46953
-
Asp
GTC
[ENA]
¡û
>W1911413068
NWVW01000011
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
46619
46543
-
Asp
GTC
[ENA]
¡û
>W1911413107
NWVX01000015
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16533
16457
-
Asp
GTC
[ENA]
¡û
>W1911413111
NWVX01000015
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16123
16047
-
Asp
GTC
[ENA]
¡û
>W1911419358
NXAO01000009
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
28505
28429
-
Asp
GTC
[ENA]
¡û
>W1911419402
NXAO01000099
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
169
93
-
Asp
GTC
[ENA]
¡û
>W1911424182
NXFY01000022
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
48575
48499
-
Asp
GTC
[ENA]
¡û
>W1911424205
NXFY01000113
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
82
158
+
Asp
GTC
[ENA]
¡û
>W1911426250
NXIE01000008
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
16273
16197
-
Asp
GTC
[ENA]
¡û
>W1911426254
NXIE01000008
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
15918
15842
-
Asp
GTC
[ENA]
¡û
>W1911576294
PDJX01000007
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
390
314
-
Asp
GTC
[ENA]
¡û
>W1911576310
PDJX01000020
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
235
311
+
Asp
GTC
[ENA]
¡û
>W1911576333
PDJX01000236
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
82
158
+
Asp
GTC
[ENA]
¡û
>W1911576354
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
29986
29910
-
Asp
GTC
[ENA]
¡û
>W1911576358
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
29583
29507
-
Asp
GTC
[ENA]
¡û
>W1911576362
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
29161
29085
-
Asp
GTC
[ENA]
¡û
>W1911576497
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
30810
30734
-
Asp
GTC
[ENA]
¡û
>W1911576501
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
30456
30380
-
Asp
GTC
[ENA]
¡û
>W1911576634
PDKF01000004
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
236103
236027
-
Asp
GTC
[ENA]
¡û
>W1911576663
PDKG01000004
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
235
311
+
Asp
GTC
[ENA]
¡û
>W1810295891
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39922
39846
-
Asp
GTC
[ENA]
¡û
>W1810295895
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39518
39442
-
Asp
GTC
[ENA]
¡û
>W1810295899
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39095
39019
-
Asp
GTC
[ENA]
¡û
>W1610835351
LPNY01000139
Campylobacterota
Arcobacter sp. EP1 [LPNY]
152350
152274
-
Asp
GTC
[ENA]
¡û
>W1710082883
BDIR01000023
Campylobacterota
Arcobacter sp. LA11 [BDIR]
1437
1361
-
Asp
GTC
[ENA]
¡û
>W1710082887
BDIR01000023
Campylobacterota
Arcobacter sp. LA11 [BDIR]
1034
958
-
Asp
GTC
[ENA]
¡û
>W1710602823
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57510
57434
-
Asp
GTC
[ENA]
¡û
>W1710602827
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57109
57033
-
Asp
GTC
[ENA]
¡û
>W1710602831
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
56687
56611
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK