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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319378 (27 seq.)
>W1710821510
LKTL01000044
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
13579
13503
-
Trp
CCA
[ENA]
¡û
>W1711273430
LZFV01000002
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
602788
602712
-
Trp
CCA
[ENA]
¡û
>W1711624495
MPHJ01000026
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
30426
30350
-
Trp
CCA
[ENA]
¡û
>W1711624623
MPHK01000028
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
2060
2136
+
Trp
CCA
[ENA]
¡û
>C171033382
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4974530
4974454
-
Trp
CCA
-
¡û
>C171108605
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
3956660
3956584
-
Trp
CCA
-
¡û
>w028585
ABDD01000064
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
10136
10058
-
Trp
CCA
[ENA]
¡û
>w019992
AAUO01000025
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
71330
71408
+
Trp
CCA
[ENA]
¡û
>W08005703
ABIC01000061
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
5954
6030
+
Trp
CCA
[ENA]
¡û
>C08010577
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
4252165
4252092
-
Trp
CCA
[Ensembl]
¡û
>W141276578
JADX01000013
Gammaproteobacteria
Shewanella fidelis ATCC BAA-318 [JADX]
26793
26717
-
Trp
CCA
[ENA]
¡û
>C08010773
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4523048
4522975
-
Trp
CCA
[Ensembl]
¡û
>WENV170023992
BCQL01013837
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1162
1086
-
Trp
CCA
[ENA]
¢þ
>C181214197
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
3898310
3898234
-
Trp
CCA
-
¡û
>C191148704
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
3286526
3286602
+
Trp
CCA
-
¡û
>W1910676735
MCTV01000025
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
697
773
+
Trp
CCA
[ENA]
¡û
>W1910676926
MCTY01000094
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
532
608
+
Trp
CCA
[ENA]
¡û
>W1910677496
MCUF01000056
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
70217
70141
-
Trp
CCA
[ENA]
¡û
>W1910679472
MCVG01000016
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
696
772
+
Trp
CCA
[ENA]
¡û
>W1910679665
MCVI01000021
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
320463
320387
-
Trp
CCA
[ENA]
¡û
>W1911710164
QPQU01000026
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
933
1009
+
Trp
CCA
[ENA]
¡û
>W1810005650
BFBQ01000004
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
74964
75040
+
Trp
CCA
[ENA]
¡û
>C10112874
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3867888
3867812
-
Trp
CCA
[Ensembl]
¡û
>W1610460578
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
439921
439845
-
Trp
CCA
[ENA]
¡û
>W1610685472
LKTL01000044
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
13579
13503
-
Trp
CCA
[ENA]
¡û
>W1611032779
LZFV01000002
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
602788
602712
-
Trp
CCA
[ENA]
¡û
>W1710460142
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
439921
439845
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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