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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319390 (33 seq.)
>W1710888849
LNAA01000005
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
6672
6599
-
Asp
GTC
[ENA]
¡û
>C171128321
LT578417
Cyanobacteriota
Cyanobium sp. NIES-981 [LT578417]
12882
12807
-
Asp
GTC
-
¡û
>C021105
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
1693695
1693622
-
Asp
GTC
[Ensembl]
¡û
>C021148
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
2623091
2623164
+
Asp
GTC
[Ensembl]
¡û
>C025530
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1921204
1921128
-
Asp
GTC
[Ensembl]
¡û
>WENV180013654
FMSI01121304
[FMSI] soil metagenome; Soil
6099
6024
-
Asp
GTC
[ENA]
¢þ
>WENV180114798
OAPS01048480
[OAPS] marine metagenome; sea water
328
403
+
Asp
GTC
[ENA]
¢þ
>WENV180591495
OCOV01029848
[OCOV] marine metagenome; ENVO:01000301
258
333
+
Asp
GTC
[ENA]
¢þ
>W08011017
ABSE01000005
Cyanobacteriota
Cyanobium sp. PCC 7001 [ABSE]
10363
10288
-
Asp
GTC
[ENA]
¡û
>WENV181367853
OFQD01002076
[OFQD] freshwater metagenome; Freshwater Lake
1235
1310
+
Asp
GTC
[ENA]
¢þ
>WENV181414150
OGCL01000054
[OGCL] hot springs metagenome; Hot spring water
82296
82221
-
Asp
GTC
[ENA]
¢þ
>WENV170573994
FLYL01061895
[FLYL] hot springs metagenome; Sediment
75
150
+
Asp
GTC
[ENA]
¢þ
>WENV170609187
FUWD011305299
[FUWD] metagenome; unknown
138
213
+
Asp
GTC
[ENA]
¢þ
>C181030486
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1580748
1580673
-
Asp
GTC
-
¡û
>C191001220
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
1799714
1799639
-
Asp
GTC
-
¡û
>C191085222
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
2192364
2192439
+
Asp
GTC
-
¡û
>C191099577
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
1224015
1223940
-
Asp
GTC
-
¡û
>C191165414
CP039373
Cyanobacteriota
Synechococcus sp. CB0101 [CP039373]
1056308
1056383
+
Asp
GTC
-
¡û
>W141712561
JMRP01000005
Cyanobacteriota
Cyanobium sp. CACIAM 14 [JMRP]
106127
106202
+
Asp
GTC
[ENA]
¡û
>W09101113
AADZ01000001
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
1911712
1911787
+
Asp
GTC
[ENA]
¡û
>C141007948
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
1239535
1239458
-
Asp
GTC
-
¡û
>W1911071048
NMQJ01000333
Cyanobacteriota
Fischerella thermalis CCMEE 5205 [NMQJ]
234
307
+
Asp
GTC
[ENA]
¡û
>W1911176918
NQKX01000008
Cyanobacteriota
Synechococcus sp. MW101C3 [NQKX]
22396
22321
-
Asp
GTC
[ENA]
¡û
>W1911176935
NQKY01000001
Cyanobacteriota
Synechococcus sp. BO 8801 [NQKY]
54587
54512
-
Asp
GTC
[ENA]
¡û
>W1911177020
NQLA01000002
Cyanobacteriota
Vulcanococcus limneticus LL [NQLA]
168681
168755
+
Asp
GTC
[ENA]
¡û
>W1911638511
PVWP01000009
Cyanobacteriota
Aphanothece minutissima minutissima CCALA 015 [PVWP]
62770
62695
-
Asp
GTC
[ENA]
¡û
>SRA1005388
SRR006907.232954
metagenomic water samples (SRP000427)
9
84
+
Asp
GTC
[SRA]
>C151009181
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
641144
641069
-
Asp
GTC
[Ensembl]
¡û
>W10120544
ADXL01000068
Cyanobacteriota
Synechococcus sp. CB0101 [ADXL]
25223
25298
+
Asp
GTC
[ENA]
¡û
>W11127288
ADXL01000068
Cyanobacteriota
Synechococcus sp. CB0101 [ADXL]
25223
25298
+
Asp
GTC
[ENA]
¡û
>W1511679500
LFEK01000125
Cyanobacteriota
Synechococcus sp. GFB01 [LFEK]
195
270
+
Asp
GTC
[ENA]
¡û
>C131003899
CP003495
Cyanobacteriota
Cyanobium gracile PCC 6307 [CP003495]
1108883
1108958
+
Asp
GTC
[Ensembl]
¡û
>W1610749227
LNAA01000005
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
6672
6599
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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