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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319531 (27 seq.)
>W1711107486
LTSV01000104
Bacillota
Nosocomiicoccus sp. HMSC059G07 [LTSV]
4729
4802
+
His
GTG
[ENA]
¡û
>W1711184884
LWMX01000006
Bacillota
Nosocomiicoccus sp. HMSC09A07 [LWMX]
79
152
+
His
GTG
[ENA]
¡û
>W131235136
AULI01000012
Bacillota
Pontibacillus halophilus DSM 19796 [AULI]
7441
7516
+
His
GTG
[ENA]
¡û
>W131235151
AULI01000013
Bacillota
Pontibacillus halophilus DSM 19796 [AULI]
1552
1627
+
His
GTG
[ENA]
¡û
>W131235183
AULJ01000005
Bacillota
Pontibacillus marinus DSM 16465 [AULJ]
141199
141274
+
His
GTG
[ENA]
¡û
>W1711720898
MTIY01000003
Bacillota
Bacillus alkalicellulosilyticus FJAT-44921 [MTIY]
517520
517595
+
His
GTG
[ENA]
¡û
>W1711720916
MTIY01000003
Bacillota
Bacillus alkalicellulosilyticus FJAT-44921 [MTIY]
1483843
1483768
-
His
GTG
[ENA]
¡û
>W131010861
AHYU01000021
Bacillota
Enterococcus durans ATCC 6056 [AHYU]
83
10
-
His
GTG
[ENA]
¡û
>W131010862
AHYU01000022
Bacillota
Enterococcus durans ATCC 6056 [AHYU]
529
456
-
His
GTG
[ENA]
¡û
>WENV170682942
LFIK01002966
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
11319
11394
+
His
GTG
[ENA]
¢þ
>C191002838
AP018524
Bacillota
Melissococcus plutonius DAT585 [AP018524]
1403504
1403431
-
His
GTG
-
¡û
>W1910899887
NGKA01000014
Bacillota
Vagococcus elongatus CCUG 51432 [NGKA]
76534
76460
-
His
GTG
[ENA]
¡û
>W1911143880
NPBH01000013
Bacillota
Terribacillus saccharophilus 7509 [NPBH]
99
172
+
His
GTG
[ENA]
¡û
>W1911143989
NPBJ01000005
Bacillota
Terribacillus saccharophilus Jan-17 [NPBJ]
10038
9965
-
His
GTG
[ENA]
¡û
>W1911144132
NPBL01000063
Bacillota
Terribacillus saccharophilus 7518 [NPBL]
100
173
+
His
GTG
[ENA]
¡û
>W1911144581
NPBV01000003
Bacillota
Terribacillus saccharophilus 7528 [NPBV]
312907
312834
-
His
GTG
[ENA]
¡û
>C151094318
CP012366
Bacillota
Enterococcus durans KLDS6.0933 [CP012366]
2345057
2345130
+
His
GTG
-
¡û
>C151094632
CP012384
Bacillota
Enterococcus durans KLDS 6.0930 [CP012384]
1273326
1273399
+
His
GTG
-
¡û
>W1510650816
CVRN01000001
Bacillota
Enterococcus massiliensis AM1 [CVRN]
809
882
+
His
GTG
[ENA]
¡û
>W1511361060
JSAX01000005
Bacillota
Melissococcus plutonius 765-6B [JSAX]
46761
46688
-
His
GTG
[ENA]
¡û
>W1511361342
JSBD01000006
Bacillota
Melissococcus plutonius L9 [JSBD]
125299
125226
-
His
GTG
[ENA]
¡û
>W1511403882
JTLM01000089
Bacillota
Carnobacterium sp. ZWU0011 [JTLM]
180
255
+
His
GTG
[ENA]
¡û
>C121000845
AP012282
Bacillota
Melissococcus plutonius DAT561 [AP012282]
700157
700230
+
His
GTG
[Ensembl]
¡û
>C161004064
CP006683
Bacillota
Melissococcus plutonius S1 [CP006683]
1445139
1445066
-
His
GTG
[Ensembl]
¡û
>W1610026975
AVPF01000041
Bacillota
Pontibacillus marinus BH030004 = DSM 16465 [AVPF]
23664
23739
+
His
GTG
[ENA]
¡û
>W1710023140
AVPF01000041
Bacillota
Pontibacillus marinus BH030004 = DSM 16465 [AVPF]
23664
23739
+
His
GTG
[ENA]
¡û
>W1710546324
FOCD01000001
Bacillota
Terribacillus saccharophilus [FOCD]
374139
374212
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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