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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319539 (23 seq.)
>W131218801
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
802609
802534
-
Ala
GGC
[ENA]
¡û
>W131186332
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
1414456
1414381
-
Ala
GGC
[ENA]
¡û
>WENV181169038
OEIV010000152
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
13233
13308
+
Ala
GGC
[ENA]
¢þ
>W141220785
AZYE01001880
Alphaproteobacteria
Microvirga lupini [AZYE]
1
76
+
Ala
GGC
[ENA]
¡û
>C08001591
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
3352815
3352890
+
Ala
GGC
[Ensembl]
¡û
>WENV170566253
FKKE01011988
[FKKE] freshwater metagenome; freshwater
495
420
-
Ala
GGC
[ENA]
¢þ
>WENV170649002
JRHI01004905
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
2561
2486
-
Ala
GGC
[ENA]
¢þ
>WENV170956769
MJUP01210376
[MJUP] soil metagenome; viral particles from soil sample MGM
408
333
-
Ala
GGC
[ENA]
¢þ
>WENV170974452
MTKY01061985
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
152
77
-
Ala
GGC
[ENA]
¢þ
>C181020288
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
2901344
2901419
+
Ala
GGC
-
¡û
>C181220384
LT703003
Alphaproteobacteria
Anderseniella sp. Alg231-50 [LT703003, LT703004, LT703005, LT703006, LT703007, LT703008, LT703009, LT703010]
641921
641996
+
Ala
GGC
-
¡û
>C191028858
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
1411383
1411458
+
Ala
GGC
-
¡û
>C191029936
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
1856592
1856517
-
Ala
GGC
-
¡û
>C191221051
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
225188
225263
+
Ala
GGC
-
¡û
>W141815691
JQJH01000001
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
409554
409629
+
Ala
GGC
[ENA]
¡û
>W141817272
JQKO01000001
Alphaproteobacteria
Methylocapsa aurea [JQKO]
154215
154140
-
Ala
GGC
[ENA]
¡û
>W1911708669
QOZQ01000002
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60012 [QOZQ]
34745
34820
+
Ala
GGC
[ENA]
¡û
>W1810658608
QJJK01000011
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
290200
290125
-
Ala
GGC
[ENA]
¡û
>W1810682800
QKVK01000005
Alphaproteobacteria
Aestuariivirga litoralis KCTC 52945 [QKVK]
156286
156211
-
Ala
GGC
[ENA]
¡û
>W1810884369
QUMO01000003
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
744387
744462
+
Ala
GGC
[ENA]
¡û
>W1710527770
FNLG01000001
Alphaproteobacteria
Rhizobiales bacterium GAS113 [FNLG]
4758244
4758169
-
Ala
GGC
[ENA]
¡û
>W1710535991
FNSX01000001
Alphaproteobacteria
Rhizobiales bacterium GAS191 [FNSX]
5541486
5541411
-
Ala
GGC
[ENA]
¡û
>W1710567168
FOSN01000005
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
186245
186320
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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