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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319548 (9 seq.)
>W1711208488
LXGJ01000096
Bacillota
Brevibacillus sp. WF146 [LXGJ]
26902
26827
-
Gly
GCC
[ENA]
¡û
>W141080415
ATNE01000010
Bacillota
Brevibacillus thermoruber 423 [ATNE]
127452
127527
+
Gly
GCC
[ENA]
¡û
>C191126928
CP034541
Bacillota
Brevibacillus marinus SCSIO 07484 [CP034541]
255288
255363
+
Gly
GCC
-
¡û
>C191126957
CP034541
Bacillota
Brevibacillus marinus SCSIO 07484 [CP034541]
949278
949353
+
Gly
GCC
-
¡û
>C191126970
CP034541
Bacillota
Brevibacillus marinus SCSIO 07484 [CP034541]
1228755
1228830
+
Gly
GCC
-
¡û
>C191126980
CP034541
Bacillota
Brevibacillus marinus SCSIO 07484 [CP034541]
3497352
3497277
-
Gly
GCC
-
¡û
>W141819411
JQMH01000002
Bacillota
Brevibacillus thermoruber PM1 [JQMH]
415908
415833
-
Gly
GCC
[ENA]
¡û
>W1511523236
JYCD01000142
Bacillota
Aeribacillus pallidus GS3372 [JYCD]
238
313
+
Gly
GCC
[ENA]
¡û
>W1610996250
LXGJ01000096
Bacillota
Brevibacillus sp. WF146 [LXGJ]
26902
26827
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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