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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319584 (73 seq.)
>W1710785576
LJHZ01000023
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
5214
5139
-
Ala
CGC
[ENA]
¡û
>W1710856821
LLZQ01000025
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
33720
33795
+
Ala
CGC
[ENA]
¡û
>W1710856914
LLZS01000009
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
313979
314054
+
Ala
CGC
[ENA]
¡û
>W1710866216
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
2016591
2016516
-
Ala
CGC
[ENA]
¡û
>W1710869732
LMJY01000016
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
289507
289432
-
Ala
CGC
[ENA]
¡û
>W1711072900
LSIA01000136
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
38269
38194
-
Ala
CGC
[ENA]
¡û
>W1711075536
LSKM01000120
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
2743
2668
-
Ala
CGC
[ENA]
¡û
>W1711089912
LTAB01000059
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
9156
9231
+
Ala
CGC
[ENA]
¡û
>W1711220338
LXQI01000034
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
109343
109418
+
Ala
CGC
[ENA]
¡û
>W1711292851
LZYB01000008
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
231608
231683
+
Ala
CGC
[ENA]
¡û
>W1711501935
MKSE01000012
Alphaproteobacteria
Altererythrobacter sp. 66-12 [MKSE]
255957
255882
-
Ala
CGC
[ENA]
¡û
>W1711505662
MKVS01000048
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
69593
69518
-
Ala
CGC
[ENA]
¡û
>W1711705034
MSQB01000011
Alphaproteobacteria
Novosphingobium panipatense [MSQB]
101744
101669
-
Ala
CGC
[ENA]
¡û
>W1711766317
MUYH01000001
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
231011
231086
+
Ala
CGC
[ENA]
¡û
>W1711766384
MUYI01000001
Alphaproteobacteria
Erythrobacter dokdonensis [MUYI]
2754379
2754304
-
Ala
CGC
[ENA]
¡û
>W1711766411
MUYJ01000002
Alphaproteobacteria
Erythrobacter tepidarius [MUYJ]
54898
54823
-
Ala
CGC
[ENA]
¡û
>W1711793262
MWLM01000022
Alphaproteobacteria
Novosphingobium sp. B 225 [MWLM]
667
742
+
Ala
CGC
[ENA]
¡û
>W1712084194
NHRH01000001
Alphaproteobacteria
Sphingomonas sp. CDS-1 [NHRH]
85897
85822
-
Ala
CGC
[ENA]
¡û
>C171019684
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
623618
623693
+
Ala
CGC
-
¡û
>C171056587
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
2070727
2070652
-
Ala
CGC
-
¡û
>W131058769
ANFX01000012
Alphaproteobacteria
Porphyrobacter sp. AAP82 [ANFX]
219631
219706
+
Ala
CGC
[ENA]
¡û
>W131222144
AUBA01000017
Alphaproteobacteria
Novosphingobium acidiphilum DSM 19966 [AUBA]
57354
57429
+
Ala
CGC
[ENA]
¡û
>WENV180020363
FTCZ01002059
[FTCZ] metagenome; soil
21529
21604
+
Ala
CGC
[ENA]
¢þ
>WENV180591805
OCOV01108040
[OCOV] marine metagenome; ENVO:01000301
388
313
-
Ala
CGC
[ENA]
¢þ
>WENV181222868
OFDC01000431
[OFDC] hot springs metagenome; Water
19531
19456
-
Ala
CGC
[ENA]
¢þ
>W141285061
JANF02000001
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
47342
47417
+
Ala
CGC
[ENA]
¡û
>WENV183733947
PJTZ01000006
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
512666
512741
+
Ala
CGC
[ENA]
¢þ
>WENV183738464
PJUE01000003
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
576447
576522
+
Ala
CGC
[ENA]
¢þ
>WENV183739105
PJUE01001704
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
416
341
-
Ala
CGC
[ENA]
¢þ
>WENV183740864
PJUF01013945
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1358
1283
-
Ala
CGC
[ENA]
¢þ
>W141400557
JDRU02000816
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
548
623
+
Ala
CGC
[ENA]
¡û
>WENV170897972
MDTD01119273
[MDTD] marine metagenome; seawater
2916
2841
-
Ala
CGC
[ENA]
¢þ
>W141484872
JFYY01000005
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
317041
317116
+
Ala
CGC
[ENA]
¡û
>W141484953
JFYZ01000017
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
839
914
+
Ala
CGC
[ENA]
¡û
>C191057037
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
1983818
1983893
+
Ala
CGC
-
¡û
>C191155740
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
294072
294147
+
Ala
CGC
-
¡û
>W1910727952
MGVU01000194
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
1051
976
-
Ala
CGC
[ENA]
¡û
>W1810064629
PDVP01000001
Alphaproteobacteria
Zhengella mangrovi X9-2-2 [PDVP]
64886
64961
+
Ala
CGC
[ENA]
¡û
>W1810120408
PHSO01000010
Alphaproteobacteria
Tsuneonella flava MS1-4 [PHSO]
5695
5770
+
Ala
CGC
[ENA]
¡û
>W1810477304
QAOS01000003
Alphaproteobacteria
Novosphingobium sp. GV055 [QAOS]
182232
182157
-
Ala
CGC
[ENA]
¡û
>W1810513858
QBUA01000003
Alphaproteobacteria
Novosphingobium sp. GV061 [QBUA]
182232
182157
-
Ala
CGC
[ENA]
¡û
>C151082929
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
1377719
1377644
-
Ala
CGC
-
¡û
>W1510012824
BBNP01000002
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
116512
116437
-
Ala
CGC
[ENA]
¡û
>W1510019435
BBWU01000049
Alphaproteobacteria
Sphingomonas changbaiensis NBRC 104936 [BBWU]
1324
1399
+
Ala
CGC
[ENA]
¡û
>W10126752
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
948027
947952
-
Ala
CGC
[ENA]
¡û
>C10111679
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
2402870
2402795
-
Ala
CGC
[Ensembl]
¡û
>C11116160
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
813526
813601
+
Ala
CGC
[Ensembl]
¡û
>W1510757092
JACV01000043
Alphaproteobacteria
Sphingobium baderi LL03 [JACV]
20960
21035
+
Ala
CGC
[ENA]
¡û
>W1511398035
JTDI01000004
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
85421
85346
-
Ala
CGC
[ENA]
¡û
>W1511398336
JTDN01000001
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
329849
329924
+
Ala
CGC
[ENA]
¡û
>W11134013
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
948027
947952
-
Ala
CGC
[ENA]
¡û
>W1511519388
JXZE01000002
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
280231
280156
-
Ala
CGC
[ENA]
¡û
>C161003344
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
1374654
1374729
+
Ala
CGC
[Ensembl]
¡û
>W121081057
AKFJ01000010
Alphaproteobacteria
Novosphingobium sp. Rr 2-17 [AKFJ]
806
881
+
Ala
CGC
[ENA]
¡û
>W121119231
ALVC01000157
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
27787
27712
-
Ala
CGC
[ENA]
¡û
>W1610071173
BCTW01000004
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
62080
62155
+
Ala
CGC
[ENA]
¡û
>W1610076566
BCYV01000011
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
764
839
+
Ala
CGC
[ENA]
¡û
>W1610076894
BCZC01000030
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
7346
7421
+
Ala
CGC
[ENA]
¡û
>W1610609163
LFVX01000026
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
56024
55949
-
Ala
CGC
[ENA]
¡û
>W1610649382
LJHZ01000023
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
5214
5139
-
Ala
CGC
[ENA]
¡û
>W1610719202
LLZQ01000025
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
33720
33795
+
Ala
CGC
[ENA]
¡û
>W1610719295
LLZS01000009
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
313979
314054
+
Ala
CGC
[ENA]
¡û
>W1610728562
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
2016591
2016516
-
Ala
CGC
[ENA]
¡û
>W1610732078
LMJY01000016
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
289507
289432
-
Ala
CGC
[ENA]
¡û
>W1611004810
LXQI01000034
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
109343
109418
+
Ala
CGC
[ENA]
¡û
>W1730020258
LSKF01000136
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
72934
72859
-
Ala
CGC
[ENA]
¡û
>W1710068538
BCTW01000004
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
62080
62155
+
Ala
CGC
[ENA]
¡û
>W1710074255
BCYV01000011
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
764
839
+
Ala
CGC
[ENA]
¡û
>W1710074583
BCZC01000030
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
7346
7421
+
Ala
CGC
[ENA]
¡û
>W1710074619
BCZD01000001
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
116567
116492
-
Ala
CGC
[ENA]
¡û
>W1710505589
FMTU01000003
Alphaproteobacteria
Sphingobium faniae [FMTU]
4243
4168
-
Ala
CGC
[ENA]
¡û
>W1710593192
FRDF01000001
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
43568
43643
+
Ala
CGC
[ENA]
¡û
>W1710730450
LFVX01000026
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
56024
55949
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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