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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31982 (51 seq.)
>W1710989944
LPWU01000102
Alphaproteobacteria
Acetobacter pasteurianus [LPWU]
16209
16120
-
Ser
TGA
[ENA]
¡û
>W1711257959
LYUD01000124
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
29436
29347
-
Ser
TGA
[ENA]
¡û
>C171036177
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
1474815
1474726
-
Ser
TGA
-
¡û
>C171036217
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
1635085
1635174
+
Ser
TGA
-
¡û
>C171120273
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
2180586
2180675
+
Ser
TGA
-
¡û
>C171120331
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
2186999
2187088
+
Ser
TGA
-
¡û
>C171126429
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
2286195
2286284
+
Ser
TGA
-
¡û
>W131176015
ARJS01000033
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [ARJS]
34053
34142
+
Ser
TGA
[ENA]
¡û
>W141224563
BAIN01000019
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
19308
19397
+
Ser
TGA
[ENA]
¡û
>W141428606
JEOA01000005
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
216639
216550
-
Ser
TGA
[ENA]
¡û
>WENV170669475
LAHS01000332
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
160446
160357
-
Ser
TGA
[ENA]
¢þ
>C181063332
CP022374
Alphaproteobacteria
Acetobacter oryzifermentans dm [CP022374]
2041912
2041823
-
Ser
TGA
-
¡û
>C181077147
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
1037279
1037368
+
Ser
TGA
-
¡û
>C181088301
CP023657
Alphaproteobacteria
Acetobacter pomorum BDGP5 [CP023657]
2412010
2412099
+
Ser
TGA
-
¡û
>C181193663
CP030871
Alphaproteobacteria
Acetobacter sp. JWB [CP030871]
1904605
1904516
-
Ser
TGA
-
¡û
>W1910007924
BDER01000044
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
38501
38412
-
Ser
TGA
[ENA]
¡û
>W1910007969
BDES01000049
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
91035
90946
-
Ser
TGA
[ENA]
¡û
>W1910007998
BDES01000079
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
21676
21587
-
Ser
TGA
[ENA]
¡û
>W1910008024
BDET01000057
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
181850
181761
-
Ser
TGA
[ENA]
¡û
>W1910008077
BDEU01000059
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
4148
4059
-
Ser
TGA
[ENA]
¡û
>W1910008101
BDEU01000105
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
18043
18132
+
Ser
TGA
[ENA]
¡û
>W1910008131
BDEV01000065
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
4148
4059
-
Ser
TGA
[ENA]
¡û
>W1910008164
BDEV01000173
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
4263
4352
+
Ser
TGA
[ENA]
¡û
>W1910008183
BDEW01000056
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
167466
167377
-
Ser
TGA
[ENA]
¡û
>W1910008236
BDEX01000062
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
4148
4059
-
Ser
TGA
[ENA]
¡û
>W1910008264
BDEX01000110
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
17966
18055
+
Ser
TGA
[ENA]
¡û
>W1910008289
BDEY01000056
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
167466
167377
-
Ser
TGA
[ENA]
¡û
>W1910008342
BDEZ01000030
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
9190
9101
-
Ser
TGA
[ENA]
¡û
>W1910182357
BJMV01000002
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
147379
147468
+
Ser
TGA
[ENA]
¡û
>C141012394
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
728806
728717
-
Ser
TGA
[Ensembl]
¡û
>W1910657465
MAPU01000032
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
11885
11974
+
Ser
TGA
[ENA]
¡û
>W1910697245
MEJG01000004
Alphaproteobacteria
Parasaccharibacter apium AS1 [MEJG]
201745
201834
+
Ser
TGA
[ENA]
¡û
>W1910753232
MKHC01000029
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
11916
11827
-
Ser
TGA
[ENA]
¡û
>C151091081
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
2787393
2787304
-
Ser
TGA
[Ensembl]
¡û
>C10100680
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
1831376
1831287
-
Ser
TGA
[Ensembl]
¡û
>C10100734
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
1923630
1923541
-
Ser
TGA
[Ensembl]
¡û
>C10100791
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
1924617
1924528
-
Ser
TGA
[Ensembl]
¡û
>C10100848
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
1923612
1923523
-
Ser
TGA
[Ensembl]
¡û
>C10100905
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
1923612
1923523
-
Ser
TGA
[Ensembl]
¡û
>C10100962
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
1924611
1924522
-
Ser
TGA
[Ensembl]
¡û
>C10101019
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
1924623
1924534
-
Ser
TGA
[Ensembl]
¡û
>C10101076
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
1923600
1923511
-
Ser
TGA
[Ensembl]
¡û
>W1511271147
JOKL01000066
Alphaproteobacteria
Acetobacter pomorum DmCS_004 [JOKL]
417
328
-
Ser
TGA
[ENA]
¡û
>W11149323
AEUP01000026
Alphaproteobacteria
Acetobacter pomorum DM001 [AEUP]
69815
69904
+
Ser
TGA
[ENA]
¡û
>C161001918
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
2024947
2024858
-
Ser
TGA
-
¡û
>C161031466
CP011120
Alphaproteobacteria
Acetobacter oryzifermentans SLV-7 [CP011120]
1989766
1989677
-
Ser
TGA
[Ensembl]
¡û
>W121122976
BACF01000032
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [BACF]
16209
16120
-
Ser
TGA
[ENA]
¡û
>W121123021
BACG01000053
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
9817
9906
+
Ser
TGA
[ENA]
¡û
>W121126874
CADO01000067
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
17680
17769
+
Ser
TGA
[ENA]
¡û
>W121126894
CADQ01000012
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
14073
14162
+
Ser
TGA
[ENA]
¡û
>W1611020431
LYUD01000124
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
29436
29347
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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