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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319946 (68 seq.)
>W1711351175
MDCF01000139
Gammaproteobacteria
Acidiferrobacter thiooxydans [MDCF]
64303
64228
-
Val
TAC
[ENA]
¡û
>W131249961
CAUE01000105
Gammaproteobacteria
Coxiella burnetii Z3055 [CAUE]
404
330
-
Val
TAC
[ENA]
¡û
>W131251127
CAVF010000020
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [CAVF]
197333
197259
-
Val
TAC
[ENA]
¡û
>C171071281
CP018005
Gammaproteobacteria
Coxiella burnetii RSA439 [CP018005]
1392209
1392135
-
Val
TAC
-
¡û
>C171073879
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
1637348
1637274
-
Val
TAC
-
¡û
>C171110911
CP020616
Gammaproteobacteria
Coxiella burnetii RSA 439 [CP020616]
1392196
1392122
-
Val
TAC
-
¡û
>C171127856
HG825990
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [HG825990]
1418533
1418459
-
Val
TAC
-
¡û
>C005229
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
1418256
1418184
-
Val
TAC
[Ensembl]
¡û
>w024165
AAYJ01000027
Gammaproteobacteria
Coxiella burnetii RSA 334 [AAYJ]
27918
27841
-
Val
TAC
[ENA]
¡û
>w020092
AAUP01000039
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
129
206
+
Val
TAC
[ENA]
¡û
>w016782
AAQO01000049
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
8162
8085
-
Val
TAC
[ENA]
¡û
>WENV180068894
MPLZ02073086
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
40413
40338
-
Val
TAC
[ENA]
¢þ
>W141027253
AKYP01000214
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
281
207
-
Val
TAC
[ENA]
¡û
>C08003032
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
485633
485559
-
Val
TAC
[Ensembl]
¡û
>C08003055
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
1498818
1498744
-
Val
TAC
[Ensembl]
¡û
>W141254785
CBTH010000103
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
57760
57686
-
Val
TAC
[ENA]
¡û
>W141260674
CCAH010000019
Gammaproteobacteria
Coxiella burnetii [CCAH]
196234
196160
-
Val
TAC
[ENA]
¡û
>W141260812
CCAK010000234
Gammaproteobacteria
Coxiella burnetii [CCAK]
286
360
+
Val
TAC
[ENA]
¡û
>W141260814
CCAK010000247
Gammaproteobacteria
Coxiella burnetii [CCAK]
571
497
-
Val
TAC
[ENA]
¡û
>W141260851
CCAL010000019
Gammaproteobacteria
Coxiella burnetii [CCAL]
196092
196018
-
Val
TAC
[ENA]
¡û
>W141260896
CCAM010000065
Gammaproteobacteria
Coxiella burnetii [CCAM]
516
442
-
Val
TAC
[ENA]
¡û
>W141267594
CCNR01000025
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
14647
14721
+
Val
TAC
[ENA]
¡û
>C181158264
CP027663
Gammaproteobacteria
Acidiferrobacter sp. SPIII_3 [CP027663]
1129294
1129369
+
Val
TAC
-
¡û
>C191091530
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
880950
881024
+
Val
TAC
-
¡û
>C191134930
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
1676874
1676800
-
Val
TAC
-
¡û
>C191174668
CP040059
Gammaproteobacteria
Coxiella burnetii RSA439 [CP040059]
1392067
1391993
-
Val
TAC
-
¡û
>W141810551
JPVV01000049
Gammaproteobacteria
Coxiella burnetii [JPVV]
15462
15388
-
Val
TAC
[ENA]
¡û
>W1910728534
MGXN01000031
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_42_8 [MGXN]
8333
8260
-
Val
TAC
[ENA]
¡û
>W1910728582
MGXP01000003
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_39_13 [MGXP]
27420
27346
-
Val
TAC
[ENA]
¡û
>W1910728656
MGXR01000006
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_43 [MGXR]
242865
242938
+
Val
TAC
[ENA]
¡û
>W1910728932
MGXZ01000007
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_39_24 [MGXZ]
27432
27358
-
Val
TAC
[ENA]
¡û
>W1910729084
MGYD01000006
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_25 [MGYD]
127004
126931
-
Val
TAC
[ENA]
¡û
>W1910729342
MGYK01000088
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_01_FULL_47_190 [MGYK]
7444
7519
+
Val
TAC
[ENA]
¡û
>W1910729424
MGYN01000021
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_42_14 [MGYN]
243048
243121
+
Val
TAC
[ENA]
¡û
>W1910729631
MGYU01000066
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_12_47_11 [MGYU]
9011
9086
+
Val
TAC
[ENA]
¡û
>W1910729688
MGYW01000002
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_42_18 [MGYW]
242823
242896
+
Val
TAC
[ENA]
¡û
>W1910729738
MGYX01000071
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_47_76 [MGYX]
7747
7822
+
Val
TAC
[ENA]
¡û
>C09102970
CP001019
Gammaproteobacteria
Coxiella burnetii CbuG_Q212 [CP001019]
508848
508922
+
Val
TAC
[Ensembl]
¡û
>C09103031
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
1637434
1637360
-
Val
TAC
[Ensembl]
¡û
>W1911118943
NOLM01000008
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
9128
9054
-
Val
TAC
[ENA]
¡û
>W1911118985
NOLN01000008
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
9129
9055
-
Val
TAC
[ENA]
¡û
>W1911119058
NOLO01000015
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
197189
197115
-
Val
TAC
[ENA]
¡û
>W1911119069
NOLP01000018
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
14770
14844
+
Val
TAC
[ENA]
¡û
>W1911119142
NOLQ01000015
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
197175
197101
-
Val
TAC
[ENA]
¡û
>W1911119226
NOLS01000015
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
197189
197115
-
Val
TAC
[ENA]
¡û
>W1911119268
NOLT01000015
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA270 [NOLT]
197189
197115
-
Val
TAC
[ENA]
¡û
>W1911119310
NOLU01000016
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
197189
197115
-
Val
TAC
[ENA]
¡û
>W1911119352
NOLV01000015
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
197189
197115
-
Val
TAC
[ENA]
¡û
>W1911136651
NOVF01000015
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
197189
197115
-
Val
TAC
[ENA]
¡û
>W1911136693
NOVG01000016
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
197117
197043
-
Val
TAC
[ENA]
¡û
>W1911136735
NOVH01000016
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA363 [NOVH]
197189
197115
-
Val
TAC
[ENA]
¡û
>W1911136778
NOVI01000035
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
37901
37827
-
Val
TAC
[ENA]
¡û
>W1911136819
NOVJ01000015
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
197189
197115
-
Val
TAC
[ENA]
¡û
>W1810059852
PDLP01000020
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
21223
21297
+
Val
TAC
[ENA]
¡û
>W1810235670
PPFM01000002
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
21198
21272
+
Val
TAC
[ENA]
¡û
>W1810235754
PPFO01000002
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
26073
26147
+
Val
TAC
[ENA]
¡û
>W1810235813
PPFP01000051
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
13192
13266
+
Val
TAC
[ENA]
¡û
>W1810235838
PPFQ01000002
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
196139
196065
-
Val
TAC
[ENA]
¡û
>W1810282321
PSYR01000002
Gammaproteobacteria
Acidiferrobacter thiooxydans m-1 [PSYR]
196999
197074
+
Val
TAC
[ENA]
¡û
>C151077679
CP011126
Gammaproteobacteria
Candidatus Coxiella mudrowiae CRt [CP011126]
380258
380332
+
Val
TAC
[Ensembl]
¡û
>C151102383
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
1418451
1418377
-
Val
TAC
-
¡û
>W1510060752
CCXO01000003
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
1055289
1055215
-
Val
TAC
[ENA]
¡û
>W1510061114
CCYB01000025
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
14647
14721
+
Val
TAC
[ENA]
¡û
>W1510064637
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
1496329
1496255
-
Val
TAC
[ENA]
¡û
>W1511555134
JZWL01000002
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
138921
138847
-
Val
TAC
[ENA]
¡û
>C161017351
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
1641999
1641925
-
Val
TAC
[Ensembl]
¡û
>C161059036
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
881031
881105
+
Val
TAC
-
¡û
>C161071902
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
826264
826338
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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