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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319963 (40 seq.)
>W1711487854
MKGQ01000031
Gammaproteobacteria
Xenorhabdus eapokensis DL20 [MKGQ]
25103
25028
-
Thr
GGT
[ENA]
¡û
>W1711487935
MKGR01000034
Gammaproteobacteria
Xenorhabdus thuongxuanensis 30TX1 [MKGR]
4320
4395
+
Thr
GGT
[ENA]
¡û
>W1711738806
MUBJ01000023
Gammaproteobacteria
Xenorhabdus vietnamensis [MUBJ]
64992
65067
+
Thr
GGT
[ENA]
¡û
>W1712108891
NJEY01000002
Gammaproteobacteria
Providencia stuartii [NJEY]
1132572
1132497
-
Thr
GGT
[ENA]
¡û
>C171046442
CP016176
Gammaproteobacteria
Xenorhabdus hominickii ANU1 [CP016176]
3168725
3168650
-
Thr
GGT
-
¡û
>W141024418
AKKM01000043
Gammaproteobacteria
Providencia alcalifaciens Dmel2 [AKKM]
4397
4472
+
Thr
GGT
[ENA]
¡û
>W141090729
AUXQ01000050
Gammaproteobacteria
Photorhabdus temperata subsp. temperata M1021 [AUXQ]
17692
17617
-
Thr
GGT
[ENA]
¡û
>W141193837
AYSJ01000016
Gammaproteobacteria
Photorhabdus khanii subsp. khanii NC19 [AYSJ]
3923
3998
+
Thr
GGT
[ENA]
¡û
>W141254123
CBSV010000013
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae Moldova [CBSV]
390
315
-
Thr
GGT
[ENA]
¡û
>W141254273
CBSX010000124
Gammaproteobacteria
Xenorhabdus bovienii str. oregonense [CBSX]
260
185
-
Thr
GGT
[ENA]
¡û
>W141254493
CBTA010000128
Gammaproteobacteria
Xenorhabdus bovienii str. Jollieti [CBTA]
252
177
-
Thr
GGT
[ENA]
¡û
>W141258486
CBXF010000153
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [CBXF]
3930
4005
+
Thr
GGT
[ENA]
¡û
>WENV170386827
CETY01197579
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
13760
13685
-
Thr
GGT
[ENA]
¢þ
>W09112427
ABXV01000040
Gammaproteobacteria
Providencia rustigianii DSM 4541 [ABXV]
4180
4255
+
Thr
GGT
[ENA]
¡û
>C181215348
LS483467
Gammaproteobacteria
Providencia alcalifaciens NCTC10286 [LS483467]
3896075
3896000
-
Thr
GGT
-
¡û
>C191057259
CP028384
Gammaproteobacteria
Providencia heimbachae 99101 [CP028384]
4086851
4086776
-
Thr
GGT
-
¡û
>C191121617
CP034212
Gammaproteobacteria
Escherichia albertii 2010C-3449 [CP034212]
2256643
2256568
-
Thr
GGT
-
¡û
>C191161407
CP038613
Gammaproteobacteria
Arsenophonus nasoniae FIN [CP038613]
3793915
3793840
-
Thr
GGT
-
¡û
>C191199197
LR134189
Gammaproteobacteria
Providencia rustigianii NCTC6933 [LR134189]
3772760
3772685
-
Thr
GGT
-
¡û
>C191210607
LR134396
Gammaproteobacteria
Providencia rustigianii NCTC8113 [LR134396]
3721381
3721306
-
Thr
GGT
-
¡û
>W1910339722
FTLG01000027
Gammaproteobacteria
Xenorhabdus innexi [FTLG]
4172
4247
+
Thr
GGT
[ENA]
¡û
>W1910918879
NIBT01000017
Gammaproteobacteria
Xenorhabdus ehlersii DSM 16337 [NIBT]
4286
4361
+
Thr
GGT
[ENA]
¡û
>W1910932767
NITZ01000021
Gammaproteobacteria
Xenorhabdus miraniensis DSM 17902 [NITZ]
99527
99602
+
Thr
GGT
[ENA]
¡û
>W1910932786
NITZ01000052
Gammaproteobacteria
Xenorhabdus miraniensis DSM 17902 [NITZ]
281
206
-
Thr
GGT
[ENA]
¡û
>W1910932834
NIUA01000001
Gammaproteobacteria
Xenorhabdus szentirmaii US123 [NIUA]
3079452
3079377
-
Thr
GGT
[ENA]
¡û
>W1910939966
NJAJ01000077
Gammaproteobacteria
Xenorhabdus stockiae DSM 17904 [NJAJ]
4253
4328
+
Thr
GGT
[ENA]
¡û
>W1910941376
NJCX01000002
Gammaproteobacteria
Xenorhabdus kozodoii DSM 17907 [NJCX]
4302
4377
+
Thr
GGT
[ENA]
¡û
>W1910942267
NJGH01000113
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [NJGH]
4488
4563
+
Thr
GGT
[ENA]
¡û
>W1911238198
NSCJ01000093
Gammaproteobacteria
Photorhabdus sp. S10-54 [NSCJ]
4279
4354
+
Thr
GGT
[ENA]
¡û
>W1911290212
NTPJ01000132
Gammaproteobacteria
Escherichia coli MOD1-EC5724 [NTPJ]
4120
4195
+
Thr
GGT
[ENA]
¡û
>W1810091244
PGGX01000035
Gammaproteobacteria
Providencia stuartii YD789-2 [PGGX]
252
177
-
Thr
GGT
[ENA]
¡û
>W1810376744
PXIC01000021
Gammaproteobacteria
Providencia alcalifaciens PRM-2 [PXIC]
4314
4389
+
Thr
GGT
[ENA]
¡û
>C151076917
CP011104
Gammaproteobacteria
Photorhabdus thracensis DSM 15199 [CP011104]
1689797
1689722
-
Thr
GGT
[Ensembl]
¡û
>C151098180
FO704550
Gammaproteobacteria
Xenorhabdus doucetiae FRM16 [FO704550]
268533
268608
+
Thr
GGT
[Ensembl]
¡û
>C10114166
FN667741
Gammaproteobacteria
Xenorhabdus bovienii SS-2004 [FN667741]
4071386
4071311
-
Thr
GGT
[Ensembl]
¡û
>W1511347722
JRJV01000205
Gammaproteobacteria
Xenorhabdus nematophila C2-3 [JRJV]
955
1030
+
Thr
GGT
[ENA]
¡û
>W1511678267
LFCV01000084
Gammaproteobacteria
Xenorhabdus khoisanae MCB [LFCV]
299
224
-
Thr
GGT
[ENA]
¡û
>C121014455
CP003546
Gammaproteobacteria
secondary endosymbiont of Ctenarytaina eucalypti [CP003546]
427109
427184
+
Thr
GGT
[Ensembl]
¡û
>W1610994258
LXEN01000089
Gammaproteobacteria
Proteus myxofaciens ATCC 19692 [LXEN]
4375
4450
+
Thr
GGT
[ENA]
¡û
>W1710565536
FORG01000061
Gammaproteobacteria
Xenorhabdus mauleonii [FORG]
4300
4375
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK