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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320046 (7 seq.)
>WENV170670599
LAHT01072080
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
1081
1155
+
Arg
TCT
[ENA]
¡û
>WENV170671630
LAHU01111273
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
490
564
+
Arg
TCT
[ENA]
¡û
>WENV170971366
MTKX01004503
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5792
5866
+
Arg
TCT
[ENA]
¡û
>WENV170976456
MTKZ01007977
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
13001
12927
-
Arg
TCT
[ENA]
¡û
>WENV170978065
MTKZ01039771
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
648
574
-
Arg
TCT
[ENA]
¡û
>WENV170978811
MTKZ01062846
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4750
4676
-
Arg
TCT
[ENA]
¡û
>W2010454540
JAAEKF010000146
Chloroflexota
Anaerolineae bacterium clx_SAG6 [JAAEKF]
38011
37937
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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