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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320053 (43 seq.)
>W1710990969
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
23480
23405
-
Gly
GCC
[ENA]
¡û
>W1710990971
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
23298
23223
-
Gly
GCC
[ENA]
¡û
>W1710990972
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
23160
23085
-
Gly
GCC
[ENA]
¡û
>W1710990973
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
22719
22644
-
Gly
GCC
[ENA]
¡û
>W1711628333
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
23314
23239
-
Gly
GCC
[ENA]
¡û
>W1711628335
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
23132
23057
-
Gly
GCC
[ENA]
¡û
>W1711628336
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
22994
22919
-
Gly
GCC
[ENA]
¡û
>W1711628337
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
22856
22781
-
Gly
GCC
[ENA]
¡û
>W1711628338
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
22717
22642
-
Gly
GCC
[ENA]
¡û
>W1711628339
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
22579
22504
-
Gly
GCC
[ENA]
¡û
>W1711628340
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
22441
22366
-
Gly
GCC
[ENA]
¡û
>W1711628341
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
22303
22228
-
Gly
GCC
[ENA]
¡û
>W1711628444
MPOF01000013
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
150997
150922
-
Gly
GCC
[ENA]
¡û
>W1711628446
MPOF01000013
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
150815
150740
-
Gly
GCC
[ENA]
¡û
>W1711628447
MPOF01000013
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
150676
150601
-
Gly
GCC
[ENA]
¡û
>W1711628448
MPOF01000013
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
150538
150463
-
Gly
GCC
[ENA]
¡û
>C171104855
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3512551
3512476
-
Gly
GCC
-
¡û
>C171104857
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3512369
3512294
-
Gly
GCC
-
¡û
>C171104858
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3512231
3512156
-
Gly
GCC
-
¡û
>C171104859
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3512093
3512018
-
Gly
GCC
-
¡û
>C171104860
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3511954
3511879
-
Gly
GCC
-
¡û
>C171104861
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3511816
3511741
-
Gly
GCC
-
¡û
>WENV180105581
OAPD01103354
[OAPD] marine metagenome; 2010
271
346
+
Gly
GCC
[ENA]
¢þ
>WENV180296124
OBJA01000008
[OBJA] soil metagenome; sediment, water from around vicinity
69904
69979
+
Gly
GCC
[ENA]
¢þ
>WENV180347077
OBLN01545595
[OBLN] sediment metagenome; sediment
79
4
-
Gly
GCC
[ENA]
¢þ
>WENV180366199
OBOC01182519
[OBOC] marine metagenome; ocean water
149
224
+
Gly
GCC
[ENA]
¢þ
>WENV180402733
OBRQ01026991
[OBRQ] human gut metagenome; ENVO:feces
125
200
+
Gly
GCC
[ENA]
¢þ
>WENV180594283
OCOZ01004914
[OCOZ] marine metagenome; vv
320
245
-
Gly
GCC
[ENA]
¢þ
>W141237760
BBJR01000025
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
162315
162240
-
Gly
GCC
[ENA]
¡û
>W1511516996
JXWN01000099
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
32612
32537
-
Gly
GCC
[ENA]
¡û
>W1511516997
JXWN01000099
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
32503
32428
-
Gly
GCC
[ENA]
¡û
>W1511516998
JXWN01000099
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
32394
32319
-
Gly
GCC
[ENA]
¡û
>W1511517000
JXWN01000099
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
32209
32134
-
Gly
GCC
[ENA]
¡û
>W1610610007
LFYP01000129
Betaproteobacteria
Comamonas kerstersii [LFYP]
51551
51626
+
Gly
GCC
[ENA]
¡û
>W1610610009
LFYP01000129
Betaproteobacteria
Comamonas kerstersii [LFYP]
51733
51808
+
Gly
GCC
[ENA]
¡û
>W1610610010
LFYP01000129
Betaproteobacteria
Comamonas kerstersii [LFYP]
51871
51946
+
Gly
GCC
[ENA]
¡û
>W1610845641
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
23480
23405
-
Gly
GCC
[ENA]
¡û
>W1610845643
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
23298
23223
-
Gly
GCC
[ENA]
¡û
>W1610845644
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
23160
23085
-
Gly
GCC
[ENA]
¡û
>W1610845645
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
22719
22644
-
Gly
GCC
[ENA]
¡û
>W1710731352
LFYP01000129
Betaproteobacteria
Comamonas kerstersii [LFYP]
51551
51626
+
Gly
GCC
[ENA]
¡û
>W1710731354
LFYP01000129
Betaproteobacteria
Comamonas kerstersii [LFYP]
51733
51808
+
Gly
GCC
[ENA]
¡û
>W1710731355
LFYP01000129
Betaproteobacteria
Comamonas kerstersii [LFYP]
51871
51946
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK