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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320084 (46 seq.)
>W1711724839
MTQN01000012
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
542777
542850
+
Glu
TTC
[ENA]
¡û
>W131159372
AQUZ01000021
Actinomycetota
Kribbella catacumbae DSM 19601 [AQUZ]
54135
54208
+
Glu
TTC
[ENA]
¡û
>W09109272
ABUC01000009
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
226486
226413
-
Glu
TTC
[ENA]
¡û
>W1810592391
QFXK01000038
Actinomycetota
Kribbella monticola NEAU-SW521 [QFXK]
236068
236141
+
Glu
TTC
[ENA]
¡û
>W2010465946
JAAGLV010000013
Actinomycetota
Streptomyces sp. SID13031 [JAAGLV]
14397
14324
-
Glu
TTC
[ENA]
¡û
>W2010561228
JAASRO010000001
Actinomycetota
Kribbella shirazensis DSM 45490 [JAASRO]
520648
520721
+
Glu
TTC
[ENA]
¡û
>W2010603437
JABJRC010000005
Actinomycetota
Kribbella sandramycini ATCC 39419 [JABJRC]
522709
522782
+
Glu
TTC
[ENA]
¡û
>W2010706451
JACHKF010000001
Actinomycetota
Kribbella sandramycini DSM 15626 [JACHKF]
1880164
1880091
-
Glu
TTC
[ENA]
¡û
>W2010710522
JACHMY010000001
Actinomycetota
Kribbella italica DSM 28967 [JACHMY]
7186997
7186924
-
Glu
TTC
[ENA]
¡û
>W2010710917
JACHNF010000001
Actinomycetota
Kribbella solani DSM 17294 [JACHNF]
5026861
5026934
+
Glu
TTC
[ENA]
¡û
>W2011578516
SGXJ01000004
Actinomycetota
Kribbella sp. VKM Ac-2569 [SGXJ]
895833
895760
-
Glu
TTC
[ENA]
¡û
>W2011579906
SHKR01000013
Actinomycetota
Kribbella soli VKM Ac-2540 [SHKR]
644703
644630
-
Glu
TTC
[ENA]
¡û
>W2011605078
SJJY01000008
Actinomycetota
Kribbella sp. YM55 SK5 [SJJY]
138198
138271
+
Glu
TTC
[ENA]
¡û
>W2011605131
SJJZ01000004
Actinomycetota
Kribbella soli KCTC 29219 [SJJZ]
971427
971500
+
Glu
TTC
[ENA]
¡û
>W2011605192
SJKA01000018
Actinomycetota
Kribbella sindirgiensis DSM 27082 [SJKA]
115208
115281
+
Glu
TTC
[ENA]
¡û
>W2011605226
SJKB01000009
Actinomycetota
Kribbella pittospori NRRL B-24813 [SJKB]
284208
284135
-
Glu
TTC
[ENA]
¡û
>W2011605299
SJKC01000006
Actinomycetota
Kribbella sp. YM55 [SJKC]
329354
329281
-
Glu
TTC
[ENA]
¡û
>W2011605305
SJKD01000001
Actinomycetota
Kribbella sp. YM53 [SJKD]
171539
171612
+
Glu
TTC
[ENA]
¡û
>W2011619705
SLVF01000003
Actinomycetota
Kribbella sp. VKM Ac-2568 [SLVF]
208720
208793
+
Glu
TTC
[ENA]
¡û
>W2011620768
SLVW01000004
Actinomycetota
Kribbella sp. VKM Ac-2500 [SLVW]
493979
494052
+
Glu
TTC
[ENA]
¡û
>W2011621862
SLWM01000005
Actinomycetota
Kribbella sp. VKM Ac-2538 [SLWM]
493983
494056
+
Glu
TTC
[ENA]
¡û
>W2011621956
SLWN01000025
Actinomycetota
Kribbella sp. VKM Ac-2572 [SLWN]
16978
17051
+
Glu
TTC
[ENA]
¡û
>W2011622115
SLWR01000005
Actinomycetota
Kribbella sp. VKM Ac-2541 [SLWR]
67413
67486
+
Glu
TTC
[ENA]
¡û
>W2011635422
SMKA01000125
Actinomycetota
Kribbella albertanoniae JCM 30547 [SMKA]
165
238
+
Glu
TTC
[ENA]
¡û
>W2011636346
SMKR01000117
Actinomycetota
Kribbella sp. 16K104 [SMKR]
8380
8453
+
Glu
TTC
[ENA]
¡û
>W2011636678
SMKX01000088
Actinomycetota
Kribbella antibiotica JCM 13523 [SMKX]
14075
14002
-
Glu
TTC
[ENA]
¡û
>W2011648101
SNWQ01000004
Actinomycetota
Kribbella sp. VKM Ac-2527 [SNWQ]
256785
256858
+
Glu
TTC
[ENA]
¡û
>W2011648232
SNWS01000011
Actinomycetota
Kribbella sp. VKM Ac-2571 [SNWS]
245278
245351
+
Glu
TTC
[ENA]
¡û
>W2011655979
SOCE01000001
Actinomycetota
Kribbella sp. VKM Ac-2575 [SOCE]
2942703
2942776
+
Glu
TTC
[ENA]
¡û
>W2011657513
SODF01000002
Actinomycetota
Kribbella sp. VKM Ac-2570 [SODF]
1881119
1881046
-
Glu
TTC
[ENA]
¡û
>W2011657931
SODP01000002
Actinomycetota
Kribbella sp. VKM Ac-2573 [SODP]
1418084
1418157
+
Glu
TTC
[ENA]
¡û
>W2011658123
SODT01000009
Actinomycetota
Kribbella sp. VKM Ac-2566 [SODT]
445336
445263
-
Glu
TTC
[ENA]
¡û
>W2011658186
SODU01000002
Actinomycetota
Kribbella sp. VKMAc-2574 [SODU]
1135949
1135876
-
Glu
TTC
[ENA]
¡û
>W2011751930
SZPZ01000001
Actinomycetota
Kribbella sp. NEAU-THZ 27 [SZPZ]
311407
311334
-
Glu
TTC
[ENA]
¡û
>W2012017481
VFMM01000001
Actinomycetota
Kribbella jejuensis DSM 17305 [VFMM]
3797442
3797369
-
Glu
TTC
[ENA]
¡û
>W2012046882
VIVK01000001
Actinomycetota
Kribbella amoyensis DSM 24683 [VIVK]
2416795
2416722
-
Glu
TTC
[ENA]
¡û
>W2110553146
JAGINT010000002
Actinomycetota
Kribbella aluminosa DSM 18824 [JAGINT]
1237907
1237834
-
Glu
TTC
[ENA]
¡û
>C211060636
CP043661
Actinomycetota
Kribbella qitaiheensis SPB151 [CP043661]
5074153
5074080
-
Glu
TTC
-
¡û
>C231555838
CP114065
Actinomycetota
Kribbella sp. CA-293567 [CP114065]
7176099
7176172
+
Glu
TTC
-
¡û
>C241201851
CP107881
Actinomycetota
Kribbella sp. NBC_00482 [CP107881]
2933215
2933142
-
Glu
TTC
-
¡û
>C241204614
CP107954
Actinomycetota
Kribbella sp. NBC_00382 [CP107954]
3166876
3166803
-
Glu
TTC
-
¡û
>C241205448
CP107975
Actinomycetota
Kribbella sp. NBC_00359 [CP107975]
3113655
3113582
-
Glu
TTC
-
¡û
>C241210316
CP108487
Actinomycetota
Kribbella sp. NBC_01245 [CP108487]
4993520
4993593
+
Glu
TTC
-
¡û
>C241212655
CP108996
Actinomycetota
Kribbella sp. NBC_00709 [CP108996]
3657995
3657922
-
Glu
TTC
-
¡û
>C241216102
CP109437
Actinomycetota
Kribbella sp. NBC_01484 [CP109437]
3389114
3389041
-
Glu
TTC
-
¡û
>C10107987
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
681327
681254
-
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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