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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320103 (49 seq.)
>W1711096246
LTHP01000023
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
10172
10097
-
Phe
GAA
[ENA]
¡û
>W1711097529
LTIU01000002
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
1152
1077
-
Phe
GAA
[ENA]
¡û
>W1711098039
LTJF01000023
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
10137
10062
-
Phe
GAA
[ENA]
¡û
>W1711098561
LTJR01000010
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
231278
231353
+
Phe
GAA
[ENA]
¡û
>W1711099037
LTKD01000004
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
142120
142195
+
Phe
GAA
[ENA]
¡û
>W1711099373
LTKK01000051
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
175
100
-
Phe
GAA
[ENA]
¡û
>W1711102286
LTNP01000024
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
551
626
+
Phe
GAA
[ENA]
¡û
>W1711102426
LTNS01000028
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
56
131
+
Phe
GAA
[ENA]
¡û
>W1711102461
LTNT01000004
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
20310
20385
+
Phe
GAA
[ENA]
¡û
>W1711103290
LTOO01000022
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
10196
10121
-
Phe
GAA
[ENA]
¡û
>W1711110077
LTVE01000049
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
425
500
+
Phe
GAA
[ENA]
¡û
>W131160917
AQXC01000007
Actinomycetota
Corynebacterium propinquum DSM 44285 [AQXC]
48169
48242
+
Phe
GAA
[ENA]
¡û
>W1711114813
LTZP01000098
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
17058
16983
-
Phe
GAA
[ENA]
¡û
>W1711114857
LTZQ01000030
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
4735
4660
-
Phe
GAA
[ENA]
¡û
>W1711114931
LTZS01000019
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
155
80
-
Phe
GAA
[ENA]
¡û
>W1711281852
LZMN01000019
Actinomycetota
Corynebacterium sp. EPI-003-04-2554_SCH2473622 [LZMN]
11233
11306
+
Phe
GAA
[ENA]
¡û
>W1711427613
MIFV01000014
Actinomycetota
Corynebacterium amycolatum [MIFV]
36034
36109
+
Phe
GAA
[ENA]
¡û
>C171002044
CP009248
Actinomycetota
Corynebacterium sphenisci DSM 44792 [CP009248]
2137618
2137543
-
Phe
GAA
-
¡û
>W131219777
ATYV01000008
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
9125
9050
-
Phe
GAA
[ENA]
¡û
>WENV180228650
OBCD01002440
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
22
95
+
Phe
GAA
[ENA]
¢þ
>WENV180554410
OCJN01000402
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
512
585
+
Phe
GAA
[ENA]
¢þ
>WENV180732135
ODGX01000787
[ODGX] human metagenome; G_DNA_Anterior nares
1223
1296
+
Phe
GAA
[ENA]
¢þ
>WENV180878922
ODLY01003970
[ODLY] human metagenome; G_DNA_Anterior nares
651
578
-
Phe
GAA
[ENA]
¢þ
>W141096290
AVFF01000096
Actinomycetota
Corynebacterium pseudodiphtheriticum 90104 [AVFF]
39433
39506
+
Phe
GAA
[ENA]
¡û
>WENV181030376
ODXG01010711
[ODXG] human metagenome; G_DNA_Anterior nares
83
156
+
Phe
GAA
[ENA]
¢þ
>WENV181032242
ODXL01000999
[ODXL] human metagenome; G_DNA_Anterior nares
1352
1425
+
Phe
GAA
[ENA]
¢þ
>W141155015
AXLQ01000001
Actinomycetota
Corynebacterium sp. KPL1995 [AXLQ]
220460
220387
-
Phe
GAA
[ENA]
¡û
>WENV182636187
OJKZ01000801
[OJKZ] metagenome; surface
10632
10705
+
Phe
GAA
[ENA]
¢þ
>WENV182643773
OJLW01001072
[OJLW] metagenome; surface
10278
10205
-
Phe
GAA
[ENA]
¢þ
>WENV182644866
OJLY01000590
[OJLY] metagenome; surface
10282
10209
-
Phe
GAA
[ENA]
¢þ
>WENV182646413
OJMA01021361
[OJMA] metagenome; surface
77
150
+
Phe
GAA
[ENA]
¢þ
>WENV183087816
OLJO01002583
[OLJO] human gut metagenome; human gut
800
727
-
Phe
GAA
[ENA]
¢þ
>WENV170726702
LSQX01390715
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
42
117
+
Phe
GAA
[ENA]
¢þ
>C181056565
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
1477820
1477747
-
Phe
GAA
-
¡û
>C181143840
CP026947
Actinomycetota
Corynebacterium yudongzhengii 2183 [CP026947]
2079763
2079689
-
Phe
GAA
-
¡û
>C191094596
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
2517665
2517738
+
Phe
GAA
-
¡û
>W141563859
JIAH01000008
Actinomycetota
Corynebacterium pseudodiphtheriticum DSM 44287 [JIAH]
218959
218886
-
Phe
GAA
[ENA]
¡û
>C141002619
CP003924
Actinomycetota
Corynebacterium maris DSM 45190 [CP003924]
2359595
2359522
-
Phe
GAA
[Ensembl]
¡û
>W1911596513
PNHF01000016
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
7694
7621
-
Phe
GAA
[ENA]
¡û
>W1810568953
QEEZ01000014
Actinomycetota
Corynebacterium yudongzhengii 2189 [QEEZ]
4901
4827
-
Phe
GAA
[ENA]
¡û
>C151039891
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
778826
778751
-
Phe
GAA
[Ensembl]
¡û
>W1511351376
JRNE01000059
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
22690
22615
-
Phe
GAA
[ENA]
¡û
>W1511461072
JVMD01000019
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
16870
16795
-
Phe
GAA
[ENA]
¡û
>W1511466797
JVSI01000032
Actinomycetota
Corynebacterium propinquum 149_CJEI [JVSI]
151833
151760
-
Phe
GAA
[ENA]
¡û
>W1511466993
JVSN01000008
Actinomycetota
Corynebacterium propinquum 143_CAUR [JVSN]
108
181
+
Phe
GAA
[ENA]
¡û
>W1511469856
JVVY01000015
Actinomycetota
Corynebacterium propinquum 1274_CJEI [JVVY]
104
177
+
Phe
GAA
[ENA]
¡û
>W1610068201
BCRD01000003
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
9480
9405
-
Phe
GAA
[ENA]
¡û
>W1611041137
LZMN01000019
Actinomycetota
Corynebacterium sp. EPI-003-04-2554_SCH2473622 [LZMN]
11233
11306
+
Phe
GAA
[ENA]
¡û
>W1710065574
BCRD01000003
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
9480
9405
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK