This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320226 (7 seq.)
>W1712009540
NEKB01000006
Actinomycetota
Alloscardovia macacae [NEKB]
5333
5408
+
Ala
TGC
[ENA]
¡û
>W141143428
AWSI01000009
Actinomycetota
Alloscardovia omnicolens F0580 [AWSI]
79601
79676
+
Ala
TGC
[ENA]
¡û
>W1810186252
PKGT01000005
Actinomycetota
Alloscardovia omnicolens UMB0006 [PKGT]
81627
81552
-
Ala
TGC
[ENA]
¡û
>C151000620
AP012333
Actinomycetota
Parascardovia denticolens DSM 10105 = JCM 12538 [AP012333]
1725791
1725866
+
Ala
TGC
[Ensembl]
¡û
>C10100444
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
10740
10813
+
Ala
TGC
[Ensembl]
¡û
>W1511453927
JVFQ01000006
Actinomycetota
Alloscardovia omnicolens 476_GVAG [JVFQ]
42106
42031
-
Ala
TGC
[ENA]
¡û
>W1511459570
JVKN01000003
Actinomycetota
Alloscardovia omnicolens 350_GVAG [JVKN]
77315
77390
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK