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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320299 (32 seq.)
>W1711185358
LWNH01000075
Gammaproteobacteria
Stenotrophomonas sp. HMSC10F06 [LWNH]
7748
7824
+
Asp
GTC
[ENA]
¡û
>W1711185359
LWNH01000075
Gammaproteobacteria
Stenotrophomonas sp. HMSC10F06 [LWNH]
7932
8008
+
Asp
GTC
[ENA]
¡û
>W1712106281
NIVS01000011
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVS]
136643
136567
-
Asp
GTC
[ENA]
¡û
>W1712106317
NIVS01000056
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVS]
77
1
-
Asp
GTC
[ENA]
¡û
>C171063436
CP017483
Gammaproteobacteria
Stenotrophomonas sp. LM091 [CP017483]
3068968
3069044
+
Asp
GTC
-
¡û
>C171063437
CP017483
Gammaproteobacteria
Stenotrophomonas sp. LM091 [CP017483]
3069152
3069228
+
Asp
GTC
-
¡û
>C171063438
CP017483
Gammaproteobacteria
Stenotrophomonas sp. LM091 [CP017483]
3069319
3069395
+
Asp
GTC
-
¡û
>W141243212
CAJH01000056
Gammaproteobacteria
Stenotrophomonas maltophilia PML168 [CAJH]
3082
3006
-
Asp
GTC
[ENA]
¡û
>W141243219
CAJH01000057
Gammaproteobacteria
Stenotrophomonas maltophilia PML168 [CAJH]
184
108
-
Asp
GTC
[ENA]
¡û
>WENV170707289
LNAP01016707
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3326
3250
-
Asp
GTC
[ENA]
¢þ
>WENV170707290
LNAP01016707
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3136
3060
-
Asp
GTC
[ENA]
¢þ
>WENV170744830
LULX01014065
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
872
948
+
Asp
GTC
[ENA]
¢þ
>W1911671944
QGAK01000003
Gammaproteobacteria
Stenotrophomonas rhizophila CFBP13529 [QGAK]
28849
28773
-
Asp
GTC
[ENA]
¡û
>W1911671945
QGAK01000003
Gammaproteobacteria
Stenotrophomonas rhizophila CFBP13529 [QGAK]
28659
28583
-
Asp
GTC
[ENA]
¡û
>W1810195281
PKQP01000011
Gammaproteobacteria
Stenotrophomonas bentonitica VV6 [PKQP]
81182
81258
+
Asp
GTC
[ENA]
¡û
>W1810195282
PKQP01000011
Gammaproteobacteria
Stenotrophomonas bentonitica VV6 [PKQP]
81366
81442
+
Asp
GTC
[ENA]
¡û
>W1810195283
PKQP01000011
Gammaproteobacteria
Stenotrophomonas bentonitica VV6 [PKQP]
81533
81609
+
Asp
GTC
[ENA]
¡û
>W1810475241
QAIW01000227
Gammaproteobacteria
Stenotrophomonas sp. HMWF003 [QAIW]
8428
8352
-
Asp
GTC
[ENA]
¡û
>W1810475242
QAIW01000227
Gammaproteobacteria
Stenotrophomonas sp. HMWF003 [QAIW]
8244
8168
-
Asp
GTC
[ENA]
¡û
>W1511583167
LATR01000005
Gammaproteobacteria
Stenotrophomonas maltophilia BR12 [LATR]
7896
7820
-
Asp
GTC
[ENA]
¡û
>W1511583168
LATR01000005
Gammaproteobacteria
Stenotrophomonas maltophilia BR12 [LATR]
7712
7636
-
Asp
GTC
[ENA]
¡û
>W1511583169
LATR01000005
Gammaproteobacteria
Stenotrophomonas maltophilia BR12 [LATR]
7545
7469
-
Asp
GTC
[ENA]
¡û
>C121011565
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
2700492
2700568
+
Asp
GTC
[Ensembl]
¡û
>C121011568
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
2700820
2700896
+
Asp
GTC
[Ensembl]
¡û
>C121011571
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
2701148
2701224
+
Asp
GTC
[Ensembl]
¡û
>C121011587
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
2337424
2337348
-
Asp
GTC
[Ensembl]
¡û
>C161017558
CP007597
Gammaproteobacteria
Stenotrophomonas rhizophila DSM 14405 [CP007597]
3531590
3531514
-
Asp
GTC
[Ensembl]
¡û
>C161017559
CP007597
Gammaproteobacteria
Stenotrophomonas rhizophila DSM 14405 [CP007597]
3531401
3531325
-
Asp
GTC
[Ensembl]
¡û
>W121017530
AGRV01000008
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
270951
270875
-
Asp
GTC
[ENA]
¡û
>W121017533
AGRV01000008
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
270623
270547
-
Asp
GTC
[ENA]
¡û
>W121017559
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
363185
363261
+
Asp
GTC
[ENA]
¡û
>W121017580
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
118
42
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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