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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320445 (13 seq.)
>W131228981
AUGL01000004
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
235
310
+
Asn
GTT
[ENA]
¡û
>W131169985
ARFE01000003
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
504490
504415
-
Asn
GTT
[ENA]
¡û
>WENV180346164
OBLN01033220
[OBLN] sediment metagenome; sediment
692
767
+
Asn
GTT
[ENA]
¢þ
>WENV170877867
MDTC01065869
[MDTC] marine metagenome; seawater
3
78
+
Asn
GTT
[ENA]
¢þ
>C181113469
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
874919
874844
-
Asn
GTT
-
¡û
>C181169303
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
2230775
2230700
-
Asn
GTT
-
¡û
>C181169304
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
2230685
2230610
-
Asn
GTT
-
¡û
>C181169305
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
2230595
2230520
-
Asn
GTT
-
¡û
>C181169306
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
2230505
2230430
-
Asn
GTT
-
¡û
>C181169307
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
2230415
2230340
-
Asn
GTT
-
¡û
>C181169315
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
528469
528394
-
Asn
GTT
-
¡û
>W09109202
ABUB01000001
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
203609
203684
+
Asn
GTT
[ENA]
¡û
>C10108030
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
955640
955565
-
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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