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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320668 (67 seq.)
>WENV180146668
OAUF01002329
[OAUF] human gut metagenome; faeces
4231
4156
-
Lys
CTT
[ENA]
¢þ
>WENV180239719
OBDB01035264
[OBDB] human gut metagenome; human gut
243
318
+
Lys
CTT
[ENA]
¢þ
>WENV180303306
OBJF01027865
[OBJF] human gut metagenome; feces
96
171
+
Lys
CTT
[ENA]
¢þ
>WENV180423809
OBVW01010900
[OBVW] human gut metagenome; faeces
62
137
+
Lys
CTT
[ENA]
¢þ
>WENV180468814
OBYM01000011
[OBYM] human gut metagenome; faeces
149610
149535
-
Lys
CTT
[ENA]
¢þ
>WENV180469139
OBYM01000618
[OBYM] human gut metagenome; faeces
130
205
+
Lys
CTT
[ENA]
¢þ
>WENV180469629
OBYM01006803
[OBYM] human gut metagenome; faeces
63
138
+
Lys
CTT
[ENA]
¢þ
>WENV180500420
OCAI01023144
[OCAI] human gut metagenome; faeces
431
506
+
Lys
CTT
[ENA]
¢þ
>WENV180543281
OCHT01097707
[OCHT] human gut metagenome; human gut
155
80
-
Lys
CTT
[ENA]
¢þ
>WENV180647029
OCSH01024997
[OCSH] human gut metagenome; human gut
1016
941
-
Lys
CTT
[ENA]
¢þ
>W141063975
APJS01000131
Bacillota
Clostridium tetanomorphum DSM 665 [APJS]
54
129
+
Lys
CTT
[ENA]
¡û
>WENV180704315
ODEI01039775
[ODEI] human metagenome; G_DNA_Stool
5
80
+
Lys
CTT
[ENA]
¢þ
>WENV180730942
ODGV01038720
[ODGV] human metagenome; G_DNA_Stool
528
453
-
Lys
CTT
[ENA]
¢þ
>WENV181030907
ODXJ01026332
[ODXJ] human metagenome; G_DNA_Stool
289
364
+
Lys
CTT
[ENA]
¢þ
>WENV181100095
OECI01067248
[OECI] human metagenome; G_DNA_Stool
148
223
+
Lys
CTT
[ENA]
¢þ
>WENV181128471
OEFW01154424
[OEFW] human metagenome; G_DNA_Stool
189
114
-
Lys
CTT
[ENA]
¢þ
>WENV181184298
OEJW01138779
[OEJW] human metagenome; G_DNA_Stool
56
131
+
Lys
CTT
[ENA]
¢þ
>WENV181186499
OEMZ01001781
[OEMZ] gut metagenome; human stools
3304
3379
+
Lys
CTT
[ENA]
¢þ
>WENV181196618
OEQY01000835
[OEQY] metagenome; Caecal content
77
2
-
Lys
CTT
[ENA]
¢þ
>WENV181197417
OERB01000766
[OERB] metagenome; Caecal content
3615
3540
-
Lys
CTT
[ENA]
¢þ
>WENV181674765
OGOP01000399
[OGOP] human gut metagenome; faeces
74
149
+
Lys
CTT
[ENA]
¢þ
>WENV181713466
OGPQ01026440
[OGPQ] human gut metagenome; faeces
114
189
+
Lys
CTT
[ENA]
¢þ
>WENV181719937
OGPU01002283
[OGPU] human gut metagenome; faeces
391
466
+
Lys
CTT
[ENA]
¢þ
>WENV181743018
OGQL01001999
[OGQL] human gut metagenome; faeces
13555
13480
-
Lys
CTT
[ENA]
¢þ
>WENV181773770
OGRE01001795
[OGRE] human gut metagenome; faeces
13561
13486
-
Lys
CTT
[ENA]
¢þ
>WENV181782353
OGRK01009667
[OGRK] human gut metagenome; faeces
72
147
+
Lys
CTT
[ENA]
¢þ
>WENV181816123
OGTL01000864
[OGTL] human gut metagenome; faeces
29582
29507
-
Lys
CTT
[ENA]
¢þ
>WENV181986115
OHAJ01037090
[OHAJ] human gut metagenome; faeces
1075
1000
-
Lys
CTT
[ENA]
¢þ
>WENV182104944
OHIB01016564
[OHIB] human gut metagenome; feces
329
404
+
Lys
CTT
[ENA]
¢þ
>WENV182136394
OHKK01000443
[OHKK] human gut metagenome; feces
21882
21807
-
Lys
CTT
[ENA]
¢þ
>WENV182142009
OHKT01027792
[OHKT] human gut metagenome; feces
582
507
-
Lys
CTT
[ENA]
¢þ
>WENV182208629
OHPX01041532
[OHPX] human gut metagenome; feces
168
93
-
Lys
CTT
[ENA]
¢þ
>WENV182259623
OHTI01000098
[OHTI] human gut metagenome; feces
70768
70693
-
Lys
CTT
[ENA]
¢þ
>WENV182307853
OHXF01016894
[OHXF] human gut metagenome; feces
472
397
-
Lys
CTT
[ENA]
¢þ
>WENV182462002
OINX01000453
[OINX] human gut metagenome; human gut
395
470
+
Lys
CTT
[ENA]
¢þ
>WENV182609893
OJJV01031121
[OJJV] metagenome; faeces
887
812
-
Lys
CTT
[ENA]
¢þ
>WENV182616469
OJKC01030530
[OJKC] metagenome; faeces
19
94
+
Lys
CTT
[ENA]
¢þ
>WENV182635488
OJKY01080649
[OJKY] metagenome; faeces
445
520
+
Lys
CTT
[ENA]
¢þ
>WENV182635826
OJKY01133108
[OJKY] metagenome; faeces
418
493
+
Lys
CTT
[ENA]
¢þ
>WENV182742433
OJQO01009738
[OJQO] human gut metagenome; stool sample
546
471
-
Lys
CTT
[ENA]
¢þ
>WENV182907414
OKTE01029099
[OKTE] human gut metagenome; feces
236
161
-
Lys
CTT
[ENA]
¢þ
>WENV183037822
OLGA01089079
[OLGA] human gut metagenome; faeces
388
463
+
Lys
CTT
[ENA]
¢þ
>WENV183064274
OLIH01003112
[OLIH] metagenome; faeces
210
285
+
Lys
CTT
[ENA]
¢þ
>WENV183064541
OLIH01014373
[OLIH] metagenome; faeces
461
386
-
Lys
CTT
[ENA]
¢þ
>WENV183155879
OLOS01001584
[OLOS] human gut metagenome; faeces
295
370
+
Lys
CTT
[ENA]
¢þ
>WENV183199412
OLPV01056030
[OLPV] human gut metagenome; faeces
296
371
+
Lys
CTT
[ENA]
¢þ
>WENV183227041
OLQO01048756
[OLQO] human gut metagenome; faeces
294
369
+
Lys
CTT
[ENA]
¢þ
>WENV183342192
OLWN01003081
[OLWN] human gut metagenome; feces
185
260
+
Lys
CTT
[ENA]
¢þ
>WENV183353921
OLXB01003709
[OLXB] human gut metagenome; feces
133
208
+
Lys
CTT
[ENA]
¢þ
>WENV183451605
OMDB01035578
[OMDB] human gut metagenome; feces
274
199
-
Lys
CTT
[ENA]
¢þ
>WENV183463013
OMDX01006256
[OMDX] human gut metagenome; feces
315
240
-
Lys
CTT
[ENA]
¢þ
>WENV183751433
PPYE01012846
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
4
79
+
Lys
CTT
[ENA]
¢þ
>WENV183757566
PPYE01167268
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
99
174
+
Lys
CTT
[ENA]
¢þ
>WENV183758647
PPYE01187658
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
22
97
+
Lys
CTT
[ENA]
¢þ
>WENV170058246
CDZH01001934
[CDZH] gut metagenome; human stools
856
781
-
Lys
CTT
[ENA]
¢þ
>WENV170778302
LXOW01383436
[LXOW] bovine gut metagenome; Cow rumen
287
212
-
Lys
CTT
[ENA]
¢þ
>C181054366
CP021850
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5807 [CP021850]
2086197
2086272
+
Lys
CTT
-
¡û
>C181054396
CP021850
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5807 [CP021850]
1646615
1646540
-
Lys
CTT
-
¡û
>C191184288
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2944696
2944621
-
Lys
CTT
-
¡û
>C191184296
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2944026
2943951
-
Lys
CTT
-
¡û
>C191184300
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2943685
2943610
-
Lys
CTT
-
¡û
>W1910213015
FMJL01000006
Bacillota
Clostridium sp. N3C [FMJL]
24509
24434
-
Lys
CTT
[ENA]
¡û
>W1910213023
FMJL01000006
Bacillota
Clostridium sp. N3C [FMJL]
23767
23692
-
Lys
CTT
[ENA]
¡û
>W1910213027
FMJL01000006
Bacillota
Clostridium sp. N3C [FMJL]
23412
23339
-
Lys
CTT
[ENA]
¡û
>W1910927615
NIOK01000013
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5808 [NIOK]
74983
75058
+
Lys
CTT
[ENA]
¡û
>W1910927631
NIOK01000031
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5808 [NIOK]
26863
26938
+
Lys
CTT
[ENA]
¡û
>W1511577665
LAQZ01000067
Bacillota
Ruminococcus sp. A254.MGS-108 [LAQZ]
1123
1048
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK