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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320802 (21 seq.)
>W1711168296
LVXY01000001
Betaproteobacteria
Cupriavidus gilardii [LVXY]
55119
55043
-
Gln
TTG
[ENA]
¡û
>W1711221679
LXRH01000283
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRH]
247
325
+
Gln
TTG
[ENA]
¡û
>W1711221715
LXRI01000008
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRI]
10187
10111
-
Gln
TTG
[ENA]
¡û
>W1711221729
LXRI01000138
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRI]
1529
1605
+
Gln
TTG
[ENA]
¡û
>C171066938
CP017748
Betaproteobacteria
Cupriavidus sp. USMAA2-4 [CP017748, CP017749]
1985495
1985571
+
Gln
TTG
-
¡û
>C171066939
CP017748
Betaproteobacteria
Cupriavidus sp. USMAA2-4 [CP017748, CP017749]
1985609
1985685
+
Gln
TTG
-
¡û
>C171067047
CP017751
Betaproteobacteria
Cupriavidus sp. USMAHM13 [CP017751, CP017752]
936808
936732
-
Gln
TTG
-
¡û
>C171067048
CP017751
Betaproteobacteria
Cupriavidus sp. USMAHM13 [CP017751, CP017752]
936694
936618
-
Gln
TTG
-
¡û
>C171067126
CP017754
Betaproteobacteria
Cupriavidus malaysiensis USMAA1020 [CP017754, CP017755]
824107
824031
-
Gln
TTG
-
¡û
>C171067127
CP017754
Betaproteobacteria
Cupriavidus malaysiensis USMAA1020 [CP017754, CP017755]
823993
823917
-
Gln
TTG
-
¡û
>W131043696
AMPR01000083
Betaproteobacteria
Cupriavidus sp. HPC(L) [AMPR]
7697
7621
-
Gln
TTG
[ENA]
¡û
>W141241347
CAHF01000014
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
176544
176620
+
Gln
TTG
[ENA]
¡û
>WENV170965602
MTEU01004724
[MTEU] soil metagenome; naturally attenuated soil
13435
13511
+
Gln
TTG
[ENA]
¢þ
>WENV170965976
MTEV01011323
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
4904
4980
+
Gln
TTG
[ENA]
¢þ
>WENV170966205
MTEX01004112
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
6053
6129
+
Gln
TTG
[ENA]
¢þ
>C151070032
CP010516
Betaproteobacteria
Cupriavidus gilardii CR3 [CP010516, CP010517]
363123
363047
-
Gln
TTG
-
¡û
>W11187580
CAFB01000047
Betaproteobacteria
Candidatus Glomeribacter gigasporarum gigasporarum BEG34 [CAFB]
34927
35003
+
Gln
TTG
[ENA]
¡û
>W1610978211
LVXY01000001
Betaproteobacteria
Cupriavidus gilardii [LVXY]
55119
55043
-
Gln
TTG
[ENA]
¡û
>W1611006148
LXRH01000283
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRH]
247
325
+
Gln
TTG
[ENA]
¡û
>W1611006184
LXRI01000008
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRI]
10187
10111
-
Gln
TTG
[ENA]
¡û
>W1611006198
LXRI01000138
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRI]
1529
1605
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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