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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32127 (38 seq.)
>W141242090
CAHY01000011
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
39855
39765
-
Ser
GCT
[ENA]
¡û
>WENV182541986
OJAV01000158
[OJAV] seawater metagenome; Sea water
12381
12471
+
Ser
GCT
[ENA]
¢þ
>WENV182542665
OJAZ01000404
[OJAZ] seawater metagenome; Sea water
20844
20934
+
Ser
GCT
[ENA]
¢þ
>WENV182543365
OJBB01000001
[OJBB] seawater metagenome; Sea water
50842
50752
-
Ser
GCT
[ENA]
¢þ
>WENV182543682
OJBC01000251
[OJBC] seawater metagenome; Sea water
3748
3838
+
Ser
GCT
[ENA]
¢þ
>WENV182547123
OJBR01001557
[OJBR] seawater metagenome; Sea water
206
116
-
Ser
GCT
[ENA]
¢þ
>WENV182550275
OJBZ01029074
[OJBZ] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182552492
OJCK01000600
[OJCK] seawater metagenome; Sea water
4210
4120
-
Ser
GCT
[ENA]
¢þ
>WENV182553200
OJCR01000442
[OJCR] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182554936
OJCY01000036
[OJCY] seawater metagenome; Sea water
43351
43441
+
Ser
GCT
[ENA]
¢þ
>WENV182555818
OJDD01001370
[OJDD] seawater metagenome; Sea water
209
119
-
Ser
GCT
[ENA]
¢þ
>WENV182557405
OJDI01028539
[OJDI] seawater metagenome; Sea water
347
437
+
Ser
GCT
[ENA]
¢þ
>WENV182559798
OJDQ01005374
[OJDQ] seawater metagenome; Sea water
918
828
-
Ser
GCT
[ENA]
¢þ
>WENV182562441
OJDZ01003151
[OJDZ] seawater metagenome; Sea water
3426
3516
+
Ser
GCT
[ENA]
¢þ
>WENV182566160
OJEJ01000299
[OJEJ] seawater metagenome; Sea water
167
77
-
Ser
GCT
[ENA]
¢þ
>WENV182567668
OJEP01000038
[OJEP] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182571117
OJFG01000449
[OJFG] seawater metagenome; Sea water
179
89
-
Ser
GCT
[ENA]
¢þ
>WENV182571981
OJFL01000018
[OJFL] seawater metagenome; Sea water
52789
52699
-
Ser
GCT
[ENA]
¢þ
>WENV182573206
OJFP01000332
[OJFP] seawater metagenome; Sea water
2606
2696
+
Ser
GCT
[ENA]
¢þ
>WENV182574806
OJFS01001851
[OJFS] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182578450
OJGO01000020
[OJGO] seawater metagenome; Sea water
87541
87631
+
Ser
GCT
[ENA]
¢þ
>WENV182580827
OJGW01015920
[OJGW] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182582813
OJHC01000306
[OJHC] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV182584348
OJHG01000029
[OJHG] seawater metagenome; Sea water
94743
94653
-
Ser
GCT
[ENA]
¢þ
>WENV182592694
OJIR01010833
[OJIR] seawater metagenome; Sea water
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV183054528
OLGU01000030
[OLGU] seawater metagenome; Sea water
41339
41249
-
Ser
GCT
[ENA]
¢þ
>WENV183059802
OLHV01005572
[OLHV] seawater metagenome; Sea water
1343
1433
+
Ser
GCT
[ENA]
¢þ
>WENV170931131
MDTG01179278
[MDTG] marine metagenome; seawater
207
117
-
Ser
GCT
[ENA]
¢þ
>C191217631
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
1272583
1272673
+
Ser
GCT
-
¡û
>W1911641200
PYHU01000005
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
308455
308365
-
Ser
GCT
[ENA]
¡û
>C11100857
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
2940025
2939935
-
Ser
GCT
[Ensembl]
¡û
>C161051417
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
2780517
2780427
-
Ser
GCT
[Ensembl]
¡û
>C161062076
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
2254825
2254735
-
Ser
GCT
-
¡û
>C161062253
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
2298376
2298286
-
Ser
GCT
-
¡û
>C161062292
CP013933
Gammaproteobacteria
Alteromonas sp. Mac2 [CP013933]
2274066
2273976
-
Ser
GCT
-
¡û
>C161071069
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
2311868
2311778
-
Ser
GCT
-
¡û
>C161086260
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
4553724
4553634
-
Ser
GCT
-
¡û
>C161086297
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
3619996
3620086
+
Ser
GCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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