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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32136 (19 seq.)
>W1710883005
LMVG01000003
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
20363
20273
-
Ser
GGA
[ENA]
¡û
>W1711051713
LRSE01000012
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
19073
18983
-
Ser
GGA
[ENA]
¡û
>C009139
CP000157
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [CP000157]
1921567
1921477
-
Ser
GGA
[Ensembl]
¡û
>WENV182547477
OJBS01009555
[OJBS] seawater metagenome; Sea water
511
601
+
Ser
GGA
[ENA]
¢þ
>WENV182547890
OJBU01001210
[OJBU] seawater metagenome; Sea water
3902
3992
+
Ser
GGA
[ENA]
¢þ
>WENV182549239
OJBY01000029
[OJBY] seawater metagenome; Sea water
67420
67510
+
Ser
GGA
[ENA]
¢þ
>WENV182549578
OJBY01002533
[OJBY] seawater metagenome; Sea water
4551
4641
+
Ser
GGA
[ENA]
¢þ
>WENV182563791
OJED01000057
[OJED] seawater metagenome; Sea water
7446
7356
-
Ser
GGA
[ENA]
¢þ
>WENV170136306
CENV01020993
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
44490
44580
+
Ser
GGA
[ENA]
¢þ
>W09101652
AAGG01000003
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [AAGG]
323706
323796
+
Ser
GGA
[ENA]
¡û
>C151079669
CP011310
Alphaproteobacteria
Aurantiacibacter atlanticus s21-N3 [CP011310]
2604552
2604462
-
Ser
GGA
[Ensembl]
¡û
>C151086188
CP011770
Alphaproteobacteria
Croceicoccus naphthovorans PQ-2 [CP011770]
824549
824639
+
Ser
GGA
[Ensembl]
¡û
>C151086730
CP011805
Alphaproteobacteria
Pelagerythrobacter marensis KCTC 22370 [CP011805]
1804365
1804275
-
Ser
GGA
[Ensembl]
¡û
>W1511398036
JTDI01000006
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
255824
255734
-
Ser
GGA
[ENA]
¡û
>W1511591749
LBHU01000004
Alphaproteobacteria
Aurantiacibacter marinus HWDM-33 [LBHU]
206143
206053
-
Ser
GGA
[ENA]
¡û
>W1511629902
LDCP01000004
Alphaproteobacteria
Aurantiacibacter marinus KCTC 23554 [LDCP]
206598
206508
-
Ser
GGA
[ENA]
¡û
>C161098704
CP016545
Alphaproteobacteria
Paraurantiacibacter namhicola JCM 16345 [CP016545]
1034418
1034508
+
Ser
GGA
[Ensembl]
¡û
>W1610744931
LMVG01000003
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
20363
20273
-
Ser
GGA
[ENA]
¡û
>W1610892842
LRSE01000012
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
19073
18983
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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