This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.321394 (35 seq.)
>W1711903051
MZGX01000004
Bacillota
Ruminiclostridium hungatei [MZGX]
200451
200376
-
Val
TAC
[ENA]
¡û
>W1711903053
MZGX01000004
Bacillota
Ruminiclostridium hungatei [MZGX]
118246
118171
-
Val
TAC
[ENA]
¡û
>W1711903069
MZGX01000016
Bacillota
Ruminiclostridium hungatei [MZGX]
13664
13589
-
Val
TAC
[ENA]
¡û
>W131098541
AORV01000046
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
142061
141986
-
Val
TAC
[ENA]
¡û
>W131098543
AORV01000046
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
37290
37215
-
Val
TAC
[ENA]
¡û
>W131098548
AORV01000056
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
20402
20327
-
Val
TAC
[ENA]
¡û
>WENV180659409
OCVV010858398
[OCVV] gut metagenome; gut
332
407
+
Val
TAC
[ENA]
¢þ
>WENV180659411
OCVV010858398
[OCVV] gut metagenome; gut
332
407
+
Val
TAC
[ENA]
¢þ
>WENV180668861
OCVV011268461
[OCVV] gut metagenome; gut
22
97
+
Val
TAC
[ENA]
¢þ
>WENV180668865
OCVV011268461
[OCVV] gut metagenome; gut
22
97
+
Val
TAC
[ENA]
¢þ
>WENV180670207
OCVV011296590
[OCVV] gut metagenome; gut
254
329
+
Val
TAC
[ENA]
¢þ
>WENV180670211
OCVV011296590
[OCVV] gut metagenome; gut
254
329
+
Val
TAC
[ENA]
¢þ
>WENV180671449
OCVV011317691
[OCVV] gut metagenome; gut
748
673
-
Val
TAC
[ENA]
¢þ
>WENV180671453
OCVV011317691
[OCVV] gut metagenome; gut
748
673
-
Val
TAC
[ENA]
¢þ
>W141279261
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1636359
1636284
-
Val
TAC
[ENA]
¡û
>W141279269
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1371156
1371081
-
Val
TAC
[ENA]
¡û
>W141279271
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1307375
1307300
-
Val
TAC
[ENA]
¡û
>C09103077
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3919190
3919115
-
Val
TAC
[Ensembl]
¡û
>C09103085
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3540611
3540536
-
Val
TAC
[Ensembl]
¡û
>C09103087
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3456233
3456158
-
Val
TAC
[Ensembl]
¡û
>W1810677412
QKMR01000007
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
108218
108143
-
Val
TAC
[ENA]
¡û
>W1810677414
QKMR01000007
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
56581
56506
-
Val
TAC
[ENA]
¡û
>W1810677424
QKMR01000013
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
84359
84434
+
Val
TAC
[ENA]
¡û
>C121009845
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4436999
4436924
-
Val
TAC
[Ensembl]
¡û
>C121009852
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4213590
4213515
-
Val
TAC
[Ensembl]
¡û
>C121009854
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4138407
4138332
-
Val
TAC
[Ensembl]
¡û
>C161103877
FP929052
Bacillota
Ruminococcus champanellensis 18P13 = JCM 17042 type strain: 18P13 [FP929052]
246132
246057
-
Val
TAC
[Ensembl]
¡û
>W1610043734
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49250
49325
+
Val
TAC
[ENA]
¡û
>W1610043743
BBAA01000007
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
58987
59062
+
Val
TAC
[ENA]
¡û
>W1610043776
BBAA01000054
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
15849
15924
+
Val
TAC
[ENA]
¡û
>W1710040894
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49250
49325
+
Val
TAC
[ENA]
¡û
>W1710040903
BBAA01000007
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
58987
59062
+
Val
TAC
[ENA]
¡û
>W1710040936
BBAA01000054
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
15849
15924
+
Val
TAC
[ENA]
¡û
>W1710510069
FMXS01000003
Bacillota
Ruminococcaceae bacterium FB2012 [FMXS]
253404
253329
-
Val
TAC
[ENA]
¡û
>W1710510096
FMXS01000009
Bacillota
Ruminococcaceae bacterium FB2012 [FMXS]
130621
130696
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK