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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.321511 (15 seq.)
>WENV182561263
OJDV01026141
[OJDV] seawater metagenome; Sea water
196
120
-
Met
CAT
[ENA]
¢þ
>WENV182585746
OJHI01004429
[OJHI] seawater metagenome; Sea water
96
172
+
Met
CAT
[ENA]
¢þ
>WENV170420085
CEUM01272519
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
273
197
-
Met
CAT
[ENA]
¢þ
>WENV170634318
FYBJ01000165
[FYBJ] marine metagenome; marine
9775
9699
-
Met
CAT
[ENA]
¢þ
>WENV170668247
LADL02002115
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
1045
969
-
Met
CAT
[ENA]
¢þ
>WENV170900400
MDTD01153956
[MDTD] marine metagenome; seawater
1843
1919
+
Met
CAT
[ENA]
¢þ
>WENV170909951
MDTE01085170
[MDTE] marine metagenome; seawater
2996
3072
+
Met
CAT
[ENA]
¢þ
>C181062168
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
1037719
1037643
-
Met
CAT
-
¡û
>C181068271
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
3389520
3389444
-
Met
CAT
-
¡û
>C181220365
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
3534378
3534454
+
Met
CAT
-
¡û
>W1911532530
OGVD01000004
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
1108005
1107929
-
Met
CAT
[ENA]
¡û
>W1810889008
QURJ01000001
Alphaproteobacteria
Altererythrobacter insulae BPTF-M16 [QURJ]
524142
524218
+
Met
CAT
[ENA]
¡û
>C161073956
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
1412570
1412646
+
Met
CAT
[Ensembl]
¡û
>C161092432
CP015963
Alphaproteobacteria
Altererythrobacter ishigakiensis NBRC 107699 [CP015963]
2010079
2010003
-
Met
CAT
-
¡û
>W1710593907
FSQW01000002
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
357651
357727
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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