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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.321547 (40 seq.)
>W1710873074
LMMN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
242471
242395
-
Pro
TGG
[ENA]
¡û
>W1710873215
LMMQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
253767
253691
-
Pro
TGG
[ENA]
¡û
>W1710874360
LMNN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
254746
254822
+
Pro
TGG
[ENA]
¡û
>W1710874420
LMNP01000004
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
103759
103835
+
Pro
TGG
[ENA]
¡û
>W1710874491
LMNQ01000034
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
366257
366181
-
Pro
TGG
[ENA]
¡û
>W1710874559
LMNS01000008
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
25363
25287
-
Pro
TGG
[ENA]
¡û
>W1710878299
LMQV01000023
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
194485
194561
+
Pro
TGG
[ENA]
¡û
>W1711078683
LSNC01000045
Alphaproteobacteria
Methylorubrum populi [LSNC]
109909
109985
+
Pro
TGG
[ENA]
¡û
>W1711571737
MNAO01000019
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
2180
2256
+
Pro
TGG
[ENA]
¡û
>W131051741
AMXU01000070
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
69097
69173
+
Pro
TGG
[ENA]
¡û
>C171092161
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
3785712
3785636
-
Pro
TGG
-
¡û
>C171115199
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
5023921
5023997
+
Pro
TGG
-
¡û
>w001811
AAAP01001359
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
910
832
-
Pro
TGG
[ENA]
¡û
>W08002418
ABEX01000014
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
118504
118431
-
Pro
TGG
[ENA]
¡û
>C08006492
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
3485095
3485171
+
Pro
TGG
[Ensembl]
¡û
>C08006640
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
3557274
3557350
+
Pro
TGG
[Ensembl]
¡û
>ENV08001985
ABOK01189168
mosquito metagenome; viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
3
79
+
Pro
TGG
[ENA]
¡û
>C181000353
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
3698443
3698519
+
Pro
TGG
-
¡û
>C181175640
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
3674267
3674343
+
Pro
TGG
-
¡û
>C181227870
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
2394458
2394382
-
Pro
TGG
-
¡û
>W09107171
ABFR01000002
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
171022
171098
+
Pro
TGG
[ENA]
¡û
>C09107423
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
3642060
3642136
+
Pro
TGG
[Ensembl]
¡û
>C09107508
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
3849212
3849288
+
Pro
TGG
[Ensembl]
¡û
>C09107610
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
3482590
3482666
+
Pro
TGG
[Ensembl]
¡û
>W1810658530
QJJJ01000001
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
146653
146577
-
Pro
TGG
[ENA]
¡û
>C161004969
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
3287829
3287905
+
Pro
TGG
[Ensembl]
¡û
>W1610042950
BAZM01000062
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
835
759
-
Pro
TGG
[ENA]
¡û
>W1610043166
BAZP01000108
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1916
1992
+
Pro
TGG
[ENA]
¡û
>W121010662
AGJK01000020
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
26130
26054
-
Pro
TGG
[ENA]
¡û
>W1610735420
LMMN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
242471
242395
-
Pro
TGG
[ENA]
¡û
>W1610735561
LMMQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
253767
253691
-
Pro
TGG
[ENA]
¡û
>W1610736706
LMNN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
254746
254822
+
Pro
TGG
[ENA]
¡û
>W1610736766
LMNP01000004
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
103759
103835
+
Pro
TGG
[ENA]
¡û
>W1610736837
LMNQ01000034
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
366257
366181
-
Pro
TGG
[ENA]
¡û
>W1610736905
LMNS01000008
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
25363
25287
-
Pro
TGG
[ENA]
¡û
>W1610740645
LMQV01000023
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
194485
194561
+
Pro
TGG
[ENA]
¡û
>W1610917593
LSNC01000045
Alphaproteobacteria
Methylorubrum populi [LSNC]
109909
109985
+
Pro
TGG
[ENA]
¡û
>W1710040110
BAZM01000062
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
835
759
-
Pro
TGG
[ENA]
¡û
>W1710040326
BAZP01000108
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1916
1992
+
Pro
TGG
[ENA]
¡û
>W1710567554
FOSV01000013
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
10010
9934
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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