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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.321548 (43 seq.)
>W1710873095
LMMN01000012
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
278188
278112
-
His
GTG
[ENA]
¡û
>W1710873222
LMMQ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
663458
663382
-
His
GTG
[ENA]
¡û
>W1710874356
LMNN01000022
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
696414
696338
-
His
GTG
[ENA]
¡û
>W1710874444
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
113231
113307
+
His
GTG
[ENA]
¡û
>W1710874494
LMNQ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
196763
196687
-
His
GTG
[ENA]
¡û
>W1710874550
LMNS01000001
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
686861
686785
-
His
GTG
[ENA]
¡û
>W1710878310
LMQV01000041
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
293457
293533
+
His
GTG
[ENA]
¡û
>W1711078691
LSNC01000047
Alphaproteobacteria
Methylorubrum populi [LSNC]
540575
540499
-
His
GTG
[ENA]
¡û
>W1711571747
MNAO01000063
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
15650
15574
-
His
GTG
[ENA]
¡û
>W131051739
AMXU01000065
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
754
678
-
His
GTG
[ENA]
¡û
>C171092149
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
4155728
4155804
+
His
GTG
-
¡û
>C171115202
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
4656606
4656530
-
His
GTG
-
¡û
>W08002390
ABEX01000003
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
395294
395370
+
His
GTG
[ENA]
¡û
>C08006510
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
3117692
3117619
-
His
GTG
[Ensembl]
¡û
>C08006658
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
3127719
3127646
-
His
GTG
[Ensembl]
¡û
>C181000371
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
3319696
3319620
-
His
GTG
-
¡û
>C181175657
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
3296565
3296489
-
His
GTG
-
¡û
>C181227836
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
2761801
2761877
+
His
GTG
-
¡û
>W09106845
ABEC01000002
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
190701
190625
-
His
GTG
[ENA]
¡û
>W09107185
ABFR01000005
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
313925
313849
-
His
GTG
[ENA]
¡û
>C09107439
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
3177403
3177327
-
His
GTG
[Ensembl]
¡û
>C09107526
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
3482703
3482627
-
His
GTG
[Ensembl]
¡û
>C09107627
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
3116046
3115970
-
His
GTG
[Ensembl]
¡û
>W1810658525
QJJJ01000001
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
517571
517647
+
His
GTG
[ENA]
¡û
>SRA1015780
SRR023846.197294
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
39
115
+
His
GTG
[SRA]
>SRA1015854
SRR023846.230264
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
38
114
+
His
GTG
[SRA]
>SRA1015900
SRR023846.248361
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
39
115
+
His
GTG
[SRA]
>SRA1016486
SRR023846.526333
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
118
42
-
His
GTG
[SRA]
>C161004986
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
2904977
2904901
-
His
GTG
[Ensembl]
¡û
>W1610042978
BAZM01001295
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
132
208
+
His
GTG
[ENA]
¡û
>W1610043190
BAZP01001404
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
231
307
+
His
GTG
[ENA]
¡û
>W121010660
AGJK01000014
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
39589
39665
+
His
GTG
[ENA]
¡û
>W1610735441
LMMN01000012
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
278188
278112
-
His
GTG
[ENA]
¡û
>W1610735568
LMMQ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
663458
663382
-
His
GTG
[ENA]
¡û
>W1610736702
LMNN01000022
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
696414
696338
-
His
GTG
[ENA]
¡û
>W1610736790
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
113231
113307
+
His
GTG
[ENA]
¡û
>W1610736840
LMNQ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
196763
196687
-
His
GTG
[ENA]
¡û
>W1610736896
LMNS01000001
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
686861
686785
-
His
GTG
[ENA]
¡û
>W1610740656
LMQV01000041
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
293457
293533
+
His
GTG
[ENA]
¡û
>W1610917601
LSNC01000047
Alphaproteobacteria
Methylorubrum populi [LSNC]
540575
540499
-
His
GTG
[ENA]
¡û
>W1710040138
BAZM01001295
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
132
208
+
His
GTG
[ENA]
¡û
>W1710040350
BAZP01001404
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
231
307
+
His
GTG
[ENA]
¡û
>W1710567552
FOSV01000012
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
149766
149690
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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