This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32175 (31 seq.)
>W1711294751
MABH01000058
Alphaproteobacteria
Cereibacter johrii [MABH]
5613
5524
-
Ser
TGA
[ENA]
¡û
>C171037027
CP015211
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
373319
373408
+
Ser
TGA
-
¡û
>W131058625
ANFS01000001
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
327530
327619
+
Ser
TGA
[ENA]
¡û
>C019252
CP000144
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
373306
373395
+
Ser
TGA
[Ensembl]
¡û
>C019348
CP000578
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
1191159
1191248
+
Ser
TGA
[Ensembl]
¡û
>WENV180231959
OBCO01000042
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
333259
333170
-
Ser
TGA
[ENA]
¢þ
>WENV180232950
OBCP01000041
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
333259
333170
-
Ser
TGA
[ENA]
¢þ
>w001245
AAAE01000110
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
14188
14277
+
Ser
TGA
[ENA]
¡û
>WENV180569895
OCLR01000705
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
13677
13588
-
Ser
TGA
[ENA]
¢þ
>WENV180570840
OCLS01000716
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
13679
13590
-
Ser
TGA
[ENA]
¢þ
>WENV180571311
OCLT01000043
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
333259
333170
-
Ser
TGA
[ENA]
¢þ
>WENV180573558
OCLW01000041
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
333259
333170
-
Ser
TGA
[ENA]
¢þ
>WENV180639625
OCRL01000045
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
333259
333170
-
Ser
TGA
[ENA]
¢þ
>WENV180640552
OCRM01000041
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
333258
333169
-
Ser
TGA
[ENA]
¢þ
>WENV170002869
AGTN01154382
[AGTN] bioreactor metagenome; poplar biomass
307
396
+
Ser
TGA
[ENA]
¢þ
>C181017259
CP015288
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
373258
373347
+
Ser
TGA
-
¡û
>C181191144
CP030272
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
373255
373344
+
Ser
TGA
-
¡û
>W09104794
AAMF01000012
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
50029
50118
+
Ser
TGA
[ENA]
¡û
>C191151047
CP036420
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
259126
259037
-
Ser
TGA
-
¡û
>W1910548868
FZOV01000003
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
376202
376113
-
Ser
TGA
[ENA]
¡û
>C09109084
CP001151
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
402820
402909
+
Ser
TGA
[Ensembl]
¡û
>W1911749459
QWGP01000019
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
44312
44401
+
Ser
TGA
[ENA]
¡û
>W1911766281
QXDK01000011
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
80442
80531
+
Ser
TGA
[ENA]
¡û
>W1810116264
PHOB01000027
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
9273
9184
-
Ser
TGA
[ENA]
¡û
>W1810463839
PZZW01000004
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
329152
329241
+
Ser
TGA
[ENA]
¡û
>W1810699106
QMCC01000005
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
228577
228488
-
Ser
TGA
[ENA]
¡û
>W1810785170
QRBG01000003
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
123781
123870
+
Ser
TGA
[ENA]
¡û
>W11160207
AFER01000002
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
563013
563102
+
Ser
TGA
[ENA]
¡û
>C161048387
CP012961
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
373257
373346
+
Ser
TGA
-
¡û
>W121076815
AKBU01000002
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
509565
509654
+
Ser
TGA
[ENA]
¡û
>W121102158
AKVW01000002
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
373258
373347
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK