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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.322921 (69 seq.)
>W1711612528
MOWR01000002
Bacillota
Streptococcus sp. 'caviae' [MOWR]
319
391
+
Asp
GTC
[ENA]
¡û
>W131087045
AOCD01000065
Bacillota
Streptococcus ratti FA-1 = DSM 20564 [AOCD]
405
477
+
Asp
GTC
[ENA]
¡û
>W131087079
AOCE01000248
Bacillota
Streptococcus sobrinus DSM 20742 = ATCC 33478 [AOCE]
360
288
-
Asp
GTC
[ENA]
¡û
>W131231560
AUIN01000011
Bacillota
Streptococcus devriesei DSM 19639 [AUIN]
360135
360063
-
Asp
GTC
[ENA]
¡û
>WENV180792787
ODIW01002310
[ODIW] human metagenome; G_DNA_Tongue dorsum
378
306
-
Asp
GTC
[ENA]
¢þ
>WENV181016565
ODWR01002380
[ODWR] human metagenome; G_DNA_Tongue dorsum
4845
4773
-
Asp
GTC
[ENA]
¢þ
>WENV181045428
ODXW01000233
[ODXW] human metagenome; G_DNA_Tongue dorsum
27903
27975
+
Asp
GTC
[ENA]
¢þ
>WENV181124799
OEFT01002348
[OEFT] human metagenome; G_DNA_Tongue dorsum
3833
3761
-
Asp
GTC
[ENA]
¢þ
>W141145871
AWVA01000069
Bacillota
Streptococcus sobrinus W1703 [AWVA]
55
127
+
Asp
GTC
[ENA]
¡û
>C181179331
CP029490
Bacillota
Streptococcus sobrinus SL1 [CP029490]
24247
24319
+
Asp
GTC
-
¡û
>C181179373
CP029490
Bacillota
Streptococcus sobrinus SL1 [CP029490]
1813408
1813336
-
Asp
GTC
-
¡û
>C181179383
CP029490
Bacillota
Streptococcus sobrinus SL1 [CP029490]
1807397
1807325
-
Asp
GTC
-
¡û
>C181179398
CP029491
Bacillota
Streptococcus sobrinus 10919 [CP029491]
24187
24259
+
Asp
GTC
-
¡û
>C181179445
CP029491
Bacillota
Streptococcus sobrinus 10919 [CP029491]
1802023
1801951
-
Asp
GTC
-
¡û
>C181179455
CP029491
Bacillota
Streptococcus sobrinus 10919 [CP029491]
1796038
1795966
-
Asp
GTC
-
¡û
>C181180402
CP029559
Bacillota
Streptococcus sobrinus NIDR 6715-15 [CP029559]
24275
24347
+
Asp
GTC
-
¡û
>C181180445
CP029559
Bacillota
Streptococcus sobrinus NIDR 6715-15 [CP029559]
1808400
1808328
-
Asp
GTC
-
¡û
>C181180465
CP029560
Bacillota
Streptococcus sobrinus NIDR 6715-7 [CP029560]
24275
24347
+
Asp
GTC
-
¡û
>C181180508
CP029560
Bacillota
Streptococcus sobrinus NIDR 6715-7 [CP029560]
1808401
1808329
-
Asp
GTC
-
¡û
>C181209590
LS483378
Bacillota
Streptococcus sobrinus NCTC12279 [LS483378]
24259
24331
+
Asp
GTC
-
¡û
>C181209632
LS483378
Bacillota
Streptococcus sobrinus NCTC12279 [LS483378]
1813496
1813424
-
Asp
GTC
-
¡û
>C181209642
LS483378
Bacillota
Streptococcus sobrinus NCTC12279 [LS483378]
1807485
1807413
-
Asp
GTC
-
¡û
>C181209791
LS483381
Bacillota
Streptococcus sobrinus NCTC10921 [LS483381]
24287
24359
+
Asp
GTC
-
¡û
>C181209834
LS483381
Bacillota
Streptococcus sobrinus NCTC10921 [LS483381]
1808471
1808399
-
Asp
GTC
-
¡û
>C191079243
CP031733
Bacillota
Streptococcus chenjunshii Z15 [CP031733]
23259
23333
+
Asp
GTC
-
¡û
>C191079280
CP031733
Bacillota
Streptococcus chenjunshii Z15 [CP031733]
2198158
2198084
-
Asp
GTC
-
¡û
>C191079295
CP031733
Bacillota
Streptococcus chenjunshii Z15 [CP031733]
1893361
1893287
-
Asp
GTC
-
¡û
>C191212361
LR134491
Bacillota
Streptococcus mutans NCTC10920 [LR134491]
23939
24011
+
Asp
GTC
-
¡û
>C191212396
LR134491
Bacillota
Streptococcus mutans NCTC10920 [LR134491]
418623
418695
+
Asp
GTC
-
¡û
>C191212405
LR134491
Bacillota
Streptococcus mutans NCTC10920 [LR134491]
567696
567768
+
Asp
GTC
-
¡û
>W1911162453
NPOU01000001
Bacillota
Streptococcus sobrinus KCOM 1157 [NPOU]
228
300
+
Asp
GTC
[ENA]
¡û
>W1911162491
NPOU01000003
Bacillota
Streptococcus sobrinus KCOM 1157 [NPOU]
48784
48712
-
Asp
GTC
[ENA]
¡û
>W1810915133
QVQY01000017
Bacillota
Streptococcus chenjunshii Z2 [QVQY]
44015
43941
-
Asp
GTC
[ENA]
¡û
>W1810915166
QVQZ01000015
Bacillota
Streptococcus chenjunshii Z1(2018) [QVQZ]
44891
44817
-
Asp
GTC
[ENA]
¡û
>W11139865
AEKN01000002
Bacillota
Streptococcus downei F0415 [AEKN]
5434
5506
+
Asp
GTC
[ENA]
¡û
>W11139883
AEKN01000011
Bacillota
Streptococcus downei F0415 [AEKN]
1012
940
-
Asp
GTC
[ENA]
¡û
>W11149561
AEUV01000005
Bacillota
Streptococcus criceti HS-6 [AEUV]
157497
157425
-
Asp
GTC
[ENA]
¡û
>W11149579
AEUV01000014
Bacillota
Streptococcus criceti HS-6 [AEUV]
58304
58232
-
Asp
GTC
[ENA]
¡û
>W11149630
AEUW01000004
Bacillota
Streptococcus macacae NCTC 11558 [AEUW]
5323
5395
+
Asp
GTC
[ENA]
¡û
>W11149637
AEUW01000005
Bacillota
Streptococcus macacae NCTC 11558 [AEUW]
188912
188840
-
Asp
GTC
[ENA]
¡û
>W11179190
AGGD01000412
Bacillota
Streptococcus sobrinus TCI-16 [AGGD]
21
93
+
Asp
GTC
[ENA]
¡û
>W11179425
AGGL01000226
Bacillota
Streptococcus sobrinus TCI-79 [AGGL]
360
288
-
Asp
GTC
[ENA]
¡û
>W11179571
AGGQ01000367
Bacillota
Streptococcus sobrinus TCI-119 [AGGQ]
360
288
-
Asp
GTC
[ENA]
¡û
>W11179639
AGGS01000232
Bacillota
Streptococcus sobrinus TCI-124 [AGGS]
24
96
+
Asp
GTC
[ENA]
¡û
>W11179694
AGGU01000399
Bacillota
Streptococcus sobrinus TCI-345 [AGGU]
257
185
-
Asp
GTC
[ENA]
¡û
>W11179719
AGGV01000321
Bacillota
Streptococcus sobrinus TCI-348 [AGGV]
24
96
+
Asp
GTC
[ENA]
¡û
>W11179747
AGGW01000477
Bacillota
Streptococcus sobrinus TCI-349 [AGGW]
383
311
-
Asp
GTC
[ENA]
¡û
>W11179806
AGGY01000199
Bacillota
Streptococcus sobrinus TCI-355 [AGGY]
360
288
-
Asp
GTC
[ENA]
¡û
>W11179833
AGGZ01000199
Bacillota
Streptococcus sobrinus TCI-357 [AGGZ]
360
288
-
Asp
GTC
[ENA]
¡û
>W11179859
AGHA01000323
Bacillota
Streptococcus sobrinus TCI-363 [AGHA]
113
185
+
Asp
GTC
[ENA]
¡û
>W11179897
AGHB01000291
Bacillota
Streptococcus sobrinus TCI-366 [AGHB]
152
80
-
Asp
GTC
[ENA]
¡û
>W11179925
AGHC01000295
Bacillota
Streptococcus sobrinus TCI-367 [AGHC]
359
287
-
Asp
GTC
[ENA]
¡û
>W11179984
AGHE01000485
Bacillota
Streptococcus sobrinus TCI-374 [AGHE]
184
112
-
Asp
GTC
[ENA]
¡û
>W11180002
AGHF01000477
Bacillota
Streptococcus sobrinus TCI-376 [AGHF]
383
311
-
Asp
GTC
[ENA]
¡û
>W11180034
AGHG01000352
Bacillota
Streptococcus sobrinus TCI-377 [AGHG]
357
285
-
Asp
GTC
[ENA]
¡û
>W11180088
AGHI01000178
Bacillota
Streptococcus sobrinus TCI-384 [AGHI]
360
288
-
Asp
GTC
[ENA]
¡û
>W11180169
AGHL01000274
Bacillota
Streptococcus sobrinus TCI-396 [AGHL]
357
285
-
Asp
GTC
[ENA]
¡û
>W11180206
AGHM01000380
Bacillota
Streptococcus sobrinus TCI-2 [AGHM]
23
95
+
Asp
GTC
[ENA]
¡û
>W11180262
AGHO01003609
Bacillota
Streptococcus sobrinus TCI-157 [AGHO]
24
96
+
Asp
GTC
[ENA]
¡û
>W11180299
AGHP01000321
Bacillota
Streptococcus sobrinus TCI-160 [AGHP]
18
90
+
Asp
GTC
[ENA]
¡û
>W11180330
AGHQ01000366
Bacillota
Streptococcus sobrinus TCI-172 [AGHQ]
280
208
-
Asp
GTC
[ENA]
¡û
>W11180382
AGHS01000754
Bacillota
Streptococcus sobrinus TCI-194 [AGHS]
360
288
-
Asp
GTC
[ENA]
¡û
>W11180437
AGHU01000262
Bacillota
Streptococcus sobrinus TCI-215 [AGHU]
360
288
-
Asp
GTC
[ENA]
¡û
>W11180466
AGHV01002167
Bacillota
Streptococcus sobrinus TCI-336 [AGHV]
360
288
-
Asp
GTC
[ENA]
¡û
>C161076200
CP014699
Bacillota
Streptococcus pantholopis TA 26 [CP014699]
2111598
2111670
+
Asp
GTC
[Ensembl]
¡û
>C161076237
CP014699
Bacillota
Streptococcus pantholopis TA 26 [CP014699]
1629310
1629238
-
Asp
GTC
[Ensembl]
¡û
>C161076248
CP014699
Bacillota
Streptococcus pantholopis TA 26 [CP014699]
1551324
1551252
-
Asp
GTC
[Ensembl]
¡û
>W1610060721
BCLE01000049
Bacillota
Streptococcus orisasini [BCLE]
115
187
+
Asp
GTC
[ENA]
¡û
>W1710058043
BCLE01000049
Bacillota
Streptococcus orisasini [BCLE]
115
187
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK