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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32330 (39 seq.)
>W1711006266
LQOE01000104
Bacillota
Lactococcus sp. DD01 [LQOE]
5928
5841
-
Ser
GCT
[ENA]
¡û
>W1711228323
LXWL01000008
Bacillota
Lactococcus garvieae [LXWL]
71172
71085
-
Ser
GCT
[ENA]
¡û
>W1711744893
MUIZ01000011
Bacillota
Lactococcus petauri 159469 [MUIZ]
924
1011
+
Ser
GCT
[ENA]
¡û
>W1711942757
NBBK01000002
Bacillota
Lactococcus garvieae [NBBK]
25355
25268
-
Ser
GCT
[ENA]
¡û
>W131010417
AHYM01000001
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
6626
6713
+
Ser
GCT
[ENA]
¡û
>W131037535
AMFD01000028
Bacillota
Lactococcus garvieae I113 [AMFD]
325
412
+
Ser
GCT
[ENA]
¡û
>W131037550
AMFE01000008
Bacillota
Lactococcus garvieae Tac2 [AMFE]
58
145
+
Ser
GCT
[ENA]
¡û
>W131044496
AMQS01000015
Bacillota
Lactococcus garvieae DCC43 [AMQS]
304
391
+
Ser
GCT
[ENA]
¡û
>W131202447
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
1833
1920
+
Ser
GCT
[ENA]
¡û
>WENV180182127
OAWO01000662
[OAWO] human gut metagenome; faeces
11779
11692
-
Ser
GCT
[ENA]
¢þ
>WENV180455248
OBXO01000736
[OBXO] human gut metagenome; faeces
21388
21301
-
Ser
GCT
[ENA]
¢þ
>W141096224
AVFE01000017
Bacillota
Lactococcus garvieae TRF1 [AVFE]
26868
26955
+
Ser
GCT
[ENA]
¡û
>W141238106
BBJW01000023
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
795
882
+
Ser
GCT
[ENA]
¡û
>WENV182518749
OIWP01001968
[OIWP] human gut metagenome; faeces
22451
22364
-
Ser
GCT
[ENA]
¢þ
>WENV182619477
OJKH01010068
[OJKH] metagenome; faeces
60
147
+
Ser
GCT
[ENA]
¢þ
>WENV183511663
OMJG01001597
[OMJG] food metagenome; Cotija cheese
92
179
+
Ser
GCT
[ENA]
¢þ
>WENV170547754
CXTS01000152
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
133
220
+
Ser
GCT
[ENA]
¢þ
>WENV170548322
CXUD01001350
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
192
105
-
Ser
GCT
[ENA]
¢þ
>WENV170549791
CXVI01001065
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
157
244
+
Ser
GCT
[ENA]
¢þ
>C181001727
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1624887
1624974
+
Ser
GCT
-
¡û
>C191044557
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1581222
1581135
-
Ser
GCT
-
¡û
>C191092452
CP032627
Bacillota
Lactococcus allomyrinae 1JSPR-7 [CP032627]
26568
26655
+
Ser
GCT
-
¡û
>W1910583255
JXJV01000024
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
182
269
+
Ser
GCT
[ENA]
¡û
>W1910641574
LTDA01000016
Bacillota
Lactococcus garvieae KS1546 [LTDA]
22438
22351
-
Ser
GCT
[ENA]
¡û
>W1810907576
QVHV01000008
Bacillota
Lactococcus petauri AM13-9 [QVHV]
889
976
+
Ser
GCT
[ENA]
¡û
>W1510060214
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
1351151
1351238
+
Ser
GCT
[ENA]
¡û
>W1510060331
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
1351151
1351238
+
Ser
GCT
[ENA]
¡û
>C11112727
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1564295
1564208
-
Ser
GCT
[Ensembl]
¡û
>C11112787
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1579189
1579102
-
Ser
GCT
[Ensembl]
¡û
>W1511314702
JPUJ01000035
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
797
884
+
Ser
GCT
[ENA]
¡û
>W11157454
AFCC01000013
Bacillota
Lactococcus garvieae 21881 [AFCC]
797
884
+
Ser
GCT
[ENA]
¡û
>W11157490
AFCD01000004
Bacillota
Lactococcus garvieae 8831 [AFCD]
797
884
+
Ser
GCT
[ENA]
¡û
>W11162777
AFHF01000018
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
31063
30976
-
Ser
GCT
[ENA]
¡û
>W121016383
AGQX01000092
Bacillota
Lactococcus garvieae TB25 [AGQX]
22394
22307
-
Ser
GCT
[ENA]
¡û
>W121016407
AGQY01000105
Bacillota
Lactococcus garvieae LG9 [AGQY]
37
124
+
Ser
GCT
[ENA]
¡û
>W121081214
AKFO01000012
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
22451
22364
-
Ser
GCT
[ENA]
¡û
>W1610856916
LQOE01000104
Bacillota
Lactococcus sp. DD01 [LQOE]
5928
5841
-
Ser
GCT
[ENA]
¡û
>W1611012240
LXWL01000008
Bacillota
Lactococcus garvieae [LXWL]
71172
71085
-
Ser
GCT
[ENA]
¡û
>W1710568194
FOTJ01000011
Bacillota
Lactococcus garvieae [FOTJ]
499
586
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK