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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323553 (83 seq.)
>W1710948124
LOSV01000107
Betaproteobacteria
Burkholderia cepacia [LOSV]
115248
115323
+
His
GTG
[ENA]
¡û
>W1710950431
LOUJ01000039
Betaproteobacteria
Burkholderia cepacia [LOUJ]
350556
350481
-
His
GTG
[ENA]
¡û
>W1710952550
LOVU01000104
Betaproteobacteria
Burkholderia ubonensis [LOVU]
135642
135717
+
His
GTG
[ENA]
¡û
>W1710955404
LOXV01000059
Betaproteobacteria
Burkholderia anthina [LOXV]
202269
202194
-
His
GTG
[ENA]
¡û
>W1710958757
LPAC01000061
Betaproteobacteria
Burkholderia stagnalis [LPAC]
36407
36482
+
His
GTG
[ENA]
¡û
>W1710966083
LPEU01000010
Betaproteobacteria
Burkholderia cepacia [LPEU]
370675
370600
-
His
GTG
[ENA]
¡û
>W1710974222
LPKC01000046
Betaproteobacteria
Burkholderia cepacia [LPKC]
343308
343233
-
His
GTG
[ENA]
¡û
>W1710977387
LPME01000080
Betaproteobacteria
Burkholderia stagnalis [LPME]
205264
205339
+
His
GTG
[ENA]
¡û
>W1710977546
LPMH01000013
Betaproteobacteria
Burkholderia stagnalis [LPMH]
220214
220139
-
His
GTG
[ENA]
¡û
>W1710978293
LPMT01000085
Betaproteobacteria
Burkholderia stagnalis [LPMT]
36407
36482
+
His
GTG
[ENA]
¡û
>W1711082096
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
971008
970933
-
His
GTG
[ENA]
¡û
>W1711756377
MURQ01000031
Betaproteobacteria
Burkholderia cenocepacia [MURQ]
167599
167524
-
His
GTG
[ENA]
¡û
>W1711759706
MUTR01000037
Betaproteobacteria
Burkholderia cenocepacia [MUTR]
111592
111517
-
His
GTG
[ENA]
¡û
>W1711760474
MUUE01000011
Betaproteobacteria
Burkholderia cenocepacia [MUUE]
53433
53358
-
His
GTG
[ENA]
¡û
>W1711760934
MUUL01000077
Betaproteobacteria
Burkholderia cenocepacia [MUUL]
96900
96975
+
His
GTG
[ENA]
¡û
>W1711760975
MUUM01000016
Betaproteobacteria
Burkholderia cenocepacia [MUUM]
120559
120484
-
His
GTG
[ENA]
¡û
>W1711762121
MUVF01000047
Betaproteobacteria
Burkholderia cenocepacia [MUVF]
47366
47291
-
His
GTG
[ENA]
¡û
>W1711764640
MUWT01000015
Betaproteobacteria
Burkholderia cenocepacia [MUWT]
60694
60619
-
His
GTG
[ENA]
¡û
>W1711764764
MUWV01000012
Betaproteobacteria
Burkholderia cenocepacia [MUWV]
57113
57038
-
His
GTG
[ENA]
¡û
>W1712050072
NFVC01000334
Betaproteobacteria
Paraburkholderia hospita terrae [NFVC]
29066
29141
+
His
GTG
[ENA]
¡û
>C171021245
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
1763157
1763082
-
His
GTG
-
¡û
>C171066965
CP017748
Betaproteobacteria
Cupriavidus sp. USMAA2-4 [CP017748, CP017749]
4182217
4182292
+
His
GTG
-
¡û
>w026655
ABBF01000623
Betaproteobacteria
Burkholderia oklahomensis EO147 [ABBF]
51003
50926
-
His
GTG
[ENA]
¡û
>WENV181221633
OFCW01000144
[OFCW] microbial mat metagenome; Microbial Mat
24509
24434
-
His
GTG
[ENA]
¢þ
>WENV181370454
OFQS01014735
[OFQS] freshwater metagenome; Freshwater Lake
327
402
+
His
GTG
[ENA]
¢þ
>WENV181416071
OGCL01046940
[OGCL] hot springs metagenome; Hot spring water
1104
1179
+
His
GTG
[ENA]
¢þ
>WENV181839459
OGVO01001969
[OGVO] freshwater metagenome; freshwater
543
468
-
His
GTG
[ENA]
¢þ
>WENV181844174
OGVV01016689
[OGVV] freshwater metagenome; freshwater
650
575
-
His
GTG
[ENA]
¢þ
>W141241318
CAHF01000008
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
93064
92989
-
His
GTG
[ENA]
¡û
>WENV183727803
PJTP01000509
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
1099
1174
+
His
GTG
[ENA]
¢þ
>WENV170573148
FLYJ01000859
[FLYJ] hot springs metagenome; Sediment
910
835
-
His
GTG
[ENA]
¢þ
>C181004583
AP018111
Betaproteobacteria
Burkholderia stabilis FERMP-21014 [AP018111, AP018112, AP018113]
350047
350122
+
His
GTG
-
¡û
>C181083532
CP023522
Betaproteobacteria
Burkholderia gladioli pv. gladioli FDAARGOS_389 [CP023522, CP023523]
1080282
1080357
+
His
GTG
-
¡û
>C191174728
CP040077
Betaproteobacteria
Trinickia violacea DHOD12 [CP040077, CP040078, CP040079]
2104350
2104275
-
His
GTG
-
¡û
>W09101087
AADY01000005
Betaproteobacteria
Cupriavidus pinatubonensis JMP134 [AADY]
313768
313843
+
His
GTG
[ENA]
¡û
>W1910548753
FZOT01000002
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
308878
308953
+
His
GTG
[ENA]
¡û
>W1910636921
LPWJ01000435
Betaproteobacteria
Cupriavidus sp. UYMSc13B [LPWJ]
32381
32306
-
His
GTG
[ENA]
¡û
>W1910808313
MTZU01000107
Betaproteobacteria
Burkholderia ubonensis ATCC 31433 [MTZU]
48015
48090
+
His
GTG
[ENA]
¡û
>W1911497929
OCSU01000002
Betaproteobacteria
Caballeronia arationis OK806 [OCSU]
1629203
1629278
+
His
GTG
[ENA]
¡û
>W1911518330
OFSR01000008
Betaproteobacteria
Cupriavidus taiwanensis [OFSR]
96098
96173
+
His
GTG
[ENA]
¡û
>W1911731465
QTOP01000001
Betaproteobacteria
Burkholderia stagnalis Bp9121 [QTOP]
159284
159359
+
His
GTG
[ENA]
¡û
>W1911731587
QTOR01000003
Betaproteobacteria
Burkholderia stagnalis Bp9105 [QTOR]
174122
174047
-
His
GTG
[ENA]
¡û
>W1911733245
QTPT01000049
Betaproteobacteria
Burkholderia sp. Bp9125 [QTPT]
8107
8032
-
His
GTG
[ENA]
¡û
>W1911733484
QTPY01000002
Betaproteobacteria
Burkholderia sp. Bp9016 [QTPY]
163377
163302
-
His
GTG
[ENA]
¡û
>W1911734968
QTQY01000003
Betaproteobacteria
Burkholderia contaminans Bp9000 [QTQY]
115029
115104
+
His
GTG
[ENA]
¡û
>W1911735218
QTRC01000017
Betaproteobacteria
Burkholderia cepacia Bp9035 [QTRC]
115063
115138
+
His
GTG
[ENA]
¡û
>W1911736918
QTSG01000014
Betaproteobacteria
Burkholderia cenocepacia Bp9009 [QTSG]
8233
8308
+
His
GTG
[ENA]
¡û
>W1911737261
QTSM01000007
Betaproteobacteria
Burkholderia cenocepacia Bp8978 [QTSM]
114950
115025
+
His
GTG
[ENA]
¡û
>W1810255032
PQII01000011
Betaproteobacteria
Burkholderia gladioli Coa14 [PQII]
256947
256872
-
His
GTG
[ENA]
¡û
>W1810295687
PTIR01000027
Betaproteobacteria
Trinickia symbiotica JPY-345 [PTIR]
17939
17864
-
His
GTG
[ENA]
¡û
>W1810354560
PVHI01000108
Betaproteobacteria
Burkholderia gladioli AU30473 [PVHI]
19433
19358
-
His
GTG
[ENA]
¡û
>W1810514495
QBUY01000016
Betaproteobacteria
Paraburkholderia sp. C35 [QBUY]
106446
106521
+
His
GTG
[ENA]
¡û
>W1810659030
QJJT01000003
Betaproteobacteria
Paraburkholderia caballeronis TNe-835 [QJJT]
231993
232068
+
His
GTG
[ENA]
¡û
>W1810870341
QUBS01000026
Betaproteobacteria
Trinickia diaoshuihuensis NEAU-SY24 [QUBS]
155246
155321
+
His
GTG
[ENA]
¡û
>C151070633
CP010536
Betaproteobacteria
Cupriavidus basilensis 4G11 [CP010536, CP010537]
2710083
2710158
+
His
GTG
[Ensembl]
¡û
>C11103923
FR687359
Betaproteobacteria
Mycetohabitans rhizoxinica HKI 454 [FR687359]
1736167
1736092
-
His
GTG
[Ensembl]
¡û
>W1511480674
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
2326973
2326898
-
His
GTG
[ENA]
¡û
>C121015754
CP003774
Betaproteobacteria
Burkholderia cepacia GG4 [CP003774, CP003775]
2022310
2022235
-
His
GTG
[Ensembl]
¡û
>W1610062809
BCNU01000004
Betaproteobacteria
Burkholderia cepacia [BCNU]
317426
317351
-
His
GTG
[ENA]
¡û
>W1610085397
CTRI01000023
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
389105
389030
-
His
GTG
[ENA]
¡û
>W1610206036
FCNW02000003
Betaproteobacteria
Caballeronia humi [FCNW]
287191
287266
+
His
GTG
[ENA]
¡û
>W1610610081
LFZK01000001
Betaproteobacteria
Sterolibacterium denitrificans [LFZK]
271945
271870
-
His
GTG
[ENA]
¡û
>W1610632438
LIPV01000010
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
142687
142762
+
His
GTG
[ENA]
¡û
>W1610804126
LOSV01000107
Betaproteobacteria
Burkholderia cepacia [LOSV]
115248
115323
+
His
GTG
[ENA]
¡û
>W1610806433
LOUJ01000039
Betaproteobacteria
Burkholderia cepacia [LOUJ]
350556
350481
-
His
GTG
[ENA]
¡û
>W1610808660
LOVU01000104
Betaproteobacteria
Burkholderia ubonensis [LOVU]
135642
135717
+
His
GTG
[ENA]
¡û
>W1610811566
LOXV01000059
Betaproteobacteria
Burkholderia anthina [LOXV]
202269
202194
-
His
GTG
[ENA]
¡û
>W1610814971
LPAC01000061
Betaproteobacteria
Burkholderia stagnalis [LPAC]
36407
36482
+
His
GTG
[ENA]
¡û
>W1610822297
LPEU01000010
Betaproteobacteria
Burkholderia cepacia [LPEU]
370675
370600
-
His
GTG
[ENA]
¡û
>W1610830436
LPKC01000046
Betaproteobacteria
Burkholderia cepacia [LPKC]
343308
343233
-
His
GTG
[ENA]
¡û
>W1610833601
LPME01000080
Betaproteobacteria
Burkholderia stagnalis [LPME]
205264
205339
+
His
GTG
[ENA]
¡û
>W1610833760
LPMH01000013
Betaproteobacteria
Burkholderia stagnalis [LPMH]
220214
220139
-
His
GTG
[ENA]
¡û
>W1610834507
LPMT01000085
Betaproteobacteria
Burkholderia stagnalis [LPMT]
36407
36482
+
His
GTG
[ENA]
¡û
>W1710060285
BCNU01000004
Betaproteobacteria
Burkholderia cepacia [BCNU]
317426
317351
-
His
GTG
[ENA]
¡û
>W1710089986
CTRI01000023
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
389105
389030
-
His
GTG
[ENA]
¡û
>W1710207329
FCNW02000003
Betaproteobacteria
Caballeronia humi [FCNW]
287191
287266
+
His
GTG
[ENA]
¡û
>W1710527982
FNLO01000009
Betaproteobacteria
Chitinasiproducens palmae JS23 [FNLO]
191630
191555
-
His
GTG
[ENA]
¡û
>W1710542877
FNZM01000009
Betaproteobacteria
Paraburkholderia tropica [FNZM]
277544
277619
+
His
GTG
[ENA]
¡û
>W1710595220
FSRU01000002
Betaproteobacteria
Paraburkholderia phenazinium [FSRU]
513672
513597
-
His
GTG
[ENA]
¡û
>W1710597066
FTMY01000001
Betaproteobacteria
Pseudacidovorax sp. RU35E [FTMY]
47517
47592
+
His
GTG
[ENA]
¡û
>W1710608294
FXAT01000002
Betaproteobacteria
Paraburkholderia susongensis [FXAT]
507951
508026
+
His
GTG
[ENA]
¡û
>W1710731426
LFZK01000001
Betaproteobacteria
Sterolibacterium denitrificans [LFZK]
271945
271870
-
His
GTG
[ENA]
¡û
>W1710766824
LIPV01000010
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
142687
142762
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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