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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32370 (46 seq.)
>W1711175261
LWEQ01000243
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
888
977
+
Ser
TGA
[ENA]
¡û
>W1711175690
LWEX01000278
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
676
587
-
Ser
TGA
[ENA]
¡û
>W1711175824
LWFA01000125
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
8127
8216
+
Ser
TGA
[ENA]
¡û
>W1711177832
LWGH01000317
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
636
547
-
Ser
TGA
[ENA]
¡û
>W1711229363
LXYJ01000018
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
14961
15050
+
Ser
TGA
[ENA]
¡û
>W1711229656
LXYQ01000087
Alphaproteobacteria
Roseovarius indicus [LXYQ]
1752
1663
-
Ser
TGA
[ENA]
¡û
>W1712085139
NHTQ01000001
Alphaproteobacteria
Rhodobacteraceae bacterium WFHF2C18 [NHTQ]
89997
89908
-
Ser
TGA
[ENA]
¡û
>C011067
CP000264
Alphaproteobacteria
Jannaschia sp. CCS1 [CP000264]
1240889
1240978
+
Ser
TGA
[Ensembl]
¡û
>C018371
CP000362
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [CP000362]
3334264
3334175
-
Ser
TGA
[Ensembl]
¡û
>w012523
AAMO01000002
Alphaproteobacteria
Pseudooceanicola batsensis HTCC2597 [AAMO]
101404
101318
-
Ser
TGA
[ENA]
¡û
>WENV181234014
OFET01000818
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
13062
13151
+
Ser
TGA
[ENA]
¢þ
>WENV181234373
OFEU01000075
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
124159
124248
+
Ser
TGA
[ENA]
¢þ
>W08005904
ABIG01000002
Alphaproteobacteria
Roseobacter litoralis Och 149 [ABIG]
252862
252776
-
Ser
TGA
[ENA]
¡û
>WENV183615474
OOEB01023011
[OOEB] marine metagenome; sea ice
471
560
+
Ser
TGA
[ENA]
¢þ
>WENV170013164
ATLU01000121
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
13781
13692
-
Ser
TGA
[ENA]
¢þ
>WENV170121094
CENL01049333
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
25616
25527
-
Ser
TGA
[ENA]
¢þ
>WENV170266619
CERE01094310
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2
91
+
Ser
TGA
[ENA]
¢þ
>C181152306
CP027407
Alphaproteobacteria
Roseobacter denitrificans FDAARGOS_309 [CP027407]
1357381
1357292
-
Ser
TGA
-
¡û
>W09102763
AAIG01000024
Alphaproteobacteria
Jannaschia sp. CCS1 [AAIG]
2257
2168
-
Ser
TGA
[ENA]
¡û
>C191160530
CP038492
Alphaproteobacteria
Rhodophyticola sp. CCM32 [CP038492]
15691
15602
-
Ser
TGA
-
¡û
>W1910442792
FWFN01000003
Alphaproteobacteria
Pseudooceanicola marinus CECT 7751 [FWFN]
511431
511342
-
Ser
TGA
[ENA]
¡û
>W1910443113
FWFU01000001
Alphaproteobacteria
Roseovarius halotolerans CECT 8110 [FWFU]
449337
449248
-
Ser
TGA
[ENA]
¡û
>W1910584231
JXTF01000019
Alphaproteobacteria
Roseovarius sp. JS7-11 [JXTF]
26678
26589
-
Ser
TGA
[ENA]
¡û
>W1911237163
NSBT01000026
Alphaproteobacteria
Actibacterium ureilyticum LS-811 [NSBT]
137425
137514
+
Ser
TGA
[ENA]
¡û
>W1911237205
NSBU01000004
Alphaproteobacteria
Actibacterium pelagium JN33 [NSBU]
765628
765717
+
Ser
TGA
[ENA]
¡û
>W1810101761
PGTD01000016
Alphaproteobacteria
Pseudooceanicola antarcticus Ar-45 [PGTD]
376979
376890
-
Ser
TGA
[ENA]
¡û
>W1810633782
QITQ01000009
Alphaproteobacteria
Roseovarius amoyensis GCL-8 [QITQ]
130588
130677
+
Ser
TGA
[ENA]
¡û
>W1810670819
QJSD01000017
Alphaproteobacteria
Primorskyibacter marinus PX7 [QJSD]
8900
8811
-
Ser
TGA
[ENA]
¡û
>W1810685598
QKZJ01000021
Alphaproteobacteria
Celeribacter halophilus DSM 26270 [QKZJ]
3867
3778
-
Ser
TGA
[ENA]
¡û
>W1810707341
QNGB01000034
Alphaproteobacteria
Roseovarius sp. TE539 [QNGB]
8908
8819
-
Ser
TGA
[ENA]
¡û
>C151073494
CP010855
Alphaproteobacteria
Marinovum algicola DG 898 [CP010855]
1556243
1556332
+
Ser
TGA
[Ensembl]
¡û
>WENV070940
AACY023829175
Marine microbial communities from Global Ocean Sampling (GOS)
1459
1368
-
Ser
TGA
[ENA]
>W1610578281
LAXI01000002
Alphaproteobacteria
Roseovarius indicus [LAXI]
510101
510190
+
Ser
TGA
[ENA]
¡û
>W1610983574
LWEQ01000243
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
888
977
+
Ser
TGA
[ENA]
¡û
>W1610984003
LWEX01000278
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
676
587
-
Ser
TGA
[ENA]
¡û
>W1610984137
LWFA01000125
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
8127
8216
+
Ser
TGA
[ENA]
¡û
>W1610986145
LWGH01000317
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
636
547
-
Ser
TGA
[ENA]
¡û
>W1611013233
LXYJ01000018
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
14961
15050
+
Ser
TGA
[ENA]
¡û
>W1611013526
LXYQ01000087
Alphaproteobacteria
Roseovarius indicus [LXYQ]
1752
1663
-
Ser
TGA
[ENA]
¡û
>W1710518522
FNEB01000009
Alphaproteobacteria
Lutimaribacter saemankumensis [FNEB]
104581
104670
+
Ser
TGA
[ENA]
¡û
>W1710555879
FOJU01000007
Alphaproteobacteria
Poseidonocella pacifica [FOJU]
36981
37070
+
Ser
TGA
[ENA]
¡û
>W1710559858
FOMY01000003
Alphaproteobacteria
Roseovarius indicus [FOMY]
69762
69673
-
Ser
TGA
[ENA]
¡û
>W1710562012
FOOO01000007
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [FOOO]
201907
201996
+
Ser
TGA
[ENA]
¡û
>W1710572908
FOXA01000010
Alphaproteobacteria
Tranquillimonas alkanivorans [FOXA]
111850
111761
-
Ser
TGA
[ENA]
¡û
>W1710574556
FOYI01000003
Alphaproteobacteria
Poseidonocella sedimentorum [FOYI]
350835
350924
+
Ser
TGA
[ENA]
¡û
>W1710697154
LAXI01000002
Alphaproteobacteria
Roseovarius indicus [LAXI]
510101
510190
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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