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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3239 (72 seq.)
>W1711585896
MOAF01000027
Actinomycetota
Bifidobacterium longum subsp. infantis [MOAF]
35892
35986
+
Ser
GCT
[ENA]
¡û
>W1711938092
NAQL01000014
Actinomycetota
Bifidobacterium longum [NAQL]
29962
30056
+
Ser
GCT
[ENA]
¡û
>WENV180128659
OATB01000633
[OATB] human gut metagenome; faeces
8189
8097
-
Ser
GCT
[ENA]
¢þ
>WENV180132624
OATI01000348
[OATI] human gut metagenome; faeces
12230
12138
-
Ser
GCT
[ENA]
¢þ
>WENV180137740
OATP01000367
[OATP] human gut metagenome; faeces
16864
16956
+
Ser
GCT
[ENA]
¢þ
>WENV180138808
OATR01000007
[OATR] human gut metagenome; faeces
54629
54721
+
Ser
GCT
[ENA]
¢þ
>WENV180139808
OATT01000978
[OATT] human gut metagenome; faeces
8190
8098
-
Ser
GCT
[ENA]
¢þ
>WENV180161555
OAVE01000239
[OAVE] human gut metagenome; faeces
17537
17629
+
Ser
GCT
[ENA]
¢þ
>WENV180167630
OAVP01000076
[OAVP] human gut metagenome; faeces
61472
61564
+
Ser
GCT
[ENA]
¢þ
>WENV180168234
OAVQ01000088
[OAVQ] human gut metagenome; faeces
14584
14492
-
Ser
GCT
[ENA]
¢þ
>WENV180180420
OAWK01000231
[OAWK] human gut metagenome; faeces
163
255
+
Ser
GCT
[ENA]
¢þ
>WENV180433632
OBWK01000047
[OBWK] human gut metagenome; faeces
12264
12172
-
Ser
GCT
[ENA]
¢þ
>WENV180445093
OBXA01001404
[OBXA] human gut metagenome; faeces
8495
8587
+
Ser
GCT
[ENA]
¢þ
>WENV180467484
OBYI01000437
[OBYI] human gut metagenome; faeces
10389
10481
+
Ser
GCT
[ENA]
¢þ
>WENV180468069
OBYJ01000329
[OBYJ] human gut metagenome; faeces
14593
14501
-
Ser
GCT
[ENA]
¢þ
>WENV180476536
OBYY01000027
[OBYY] human gut metagenome; faeces
17537
17629
+
Ser
GCT
[ENA]
¢þ
>WENV180490307
OBZU01000070
[OBZU] human gut metagenome; faeces
20717
20625
-
Ser
GCT
[ENA]
¢þ
>WENV180596616
OCPI01000140
[OCPI] human gut metagenome; faeces
27310
27218
-
Ser
GCT
[ENA]
¢þ
>WENV180749437
ODHP01021969
[ODHP] human metagenome; G_DNA_Stool
189
97
-
Ser
GCT
[ENA]
¢þ
>WENV180867167
ODLK01000240
[ODLK] human metagenome; G_DNA_Stool
8488
8396
-
Ser
GCT
[ENA]
¢þ
>WENV180965499
ODUP01001833
[ODUP] human metagenome; G_DNA_Stool
8365
8273
-
Ser
GCT
[ENA]
¢þ
>WENV181216987
OFCH01000008
[OFCH] metagenome; Human gut stool
117527
117619
+
Ser
GCT
[ENA]
¢þ
>WENV181218307
OFCM01000137
[OFCM] metagenome; Human gut stool
29159
29251
+
Arg
TCT
[ENA]
¢þ
>WENV181220139
OFCQ01000109
[OFCQ] metagenome; Human gut stool
22516
22424
-
Ser
GCT
[ENA]
¢þ
>WENV181225673
OFDJ01000012
[OFDJ] metagenome; Human gut stool
22516
22424
-
Ser
GCT
[ENA]
¢þ
>WENV181327911
OFLS01000005
[OFLS] metagenome; faeces
151312
151220
-
Ser
GCT
[ENA]
¢þ
>WENV181330608
OFLY01044406
[OFLY] human gut metagenome; human gut
359
267
-
Ser
GCT
[ENA]
¢þ
>WENV181331244
OFLZ01001265
[OFLZ] human gut metagenome; human gut
2790
2698
-
Ser
GCT
[ENA]
¢þ
>WENV181332865
OFMA01009961
[OFMA] human gut metagenome; human gut
980
888
-
Ser
GCT
[ENA]
¢þ
>WENV181389393
OFRN01004970
[OFRN] metagenome; faeces
597
505
-
Ser
GCT
[ENA]
¢þ
>WENV181671463
OGON01001775
[OGON] human gut metagenome; faeces
8495
8587
+
Ser
GCT
[ENA]
¢þ
>WENV181691982
OGOZ01045443
[OGOZ] human gut metagenome; faeces
447
539
+
Ser
GCT
[ENA]
¢þ
>WENV181907153
OGXZ01044523
[OGXZ] human gut metagenome; faeces
331
423
+
Ser
GCT
[ENA]
¢þ
>WENV181966697
OGZV01000247
[OGZV] human gut metagenome; faeces
22152
22060
-
Ser
GCT
[ENA]
¢þ
>WENV182815773
OJYU01000016
[OJYU] human gut metagenome; human gut
28856
28764
-
Ser
GCT
[ENA]
¢þ
>WENV182815960
OJYV01000069
[OJYV] human gut metagenome; human gut
16380
16472
+
Ser
GCT
[ENA]
¢þ
>WENV182821661
OKBA01000033
[OKBA] human gut metagenome; human gut
28856
28764
-
Ser
GCT
[ENA]
¢þ
>WENV182825024
OKCG01001052
[OKCG] human gut metagenome; human gut
5626
5534
-
Ser
GCT
[ENA]
¢þ
>WENV182827089
OKCX01000019
[OKCX] human gut metagenome; human gut
31113
31021
-
Ser
GCT
[ENA]
¢þ
>WENV182830509
OKDZ01000099
[OKDZ] human gut metagenome; human gut
16381
16473
+
Ser
GCT
[ENA]
¢þ
>WENV182832033
OKEJ01000064
[OKEJ] human gut metagenome; human gut
16380
16472
+
Ser
GCT
[ENA]
¢þ
>WENV182860153
OKOR01000234
[OKOR] human gut metagenome; human gut
16381
16473
+
Ser
GCT
[ENA]
¢þ
>WENV182861301
OKPE01000036
[OKPE] human gut metagenome; human gut
16380
16472
+
Ser
GCT
[ENA]
¢þ
>WENV182865206
OKQJ01000050
[OKQJ] human gut metagenome; human gut
23455
23363
-
Ser
GCT
[ENA]
¢þ
>WENV182941672
OKVG01005068
[OKVG] human gut metagenome; human gut
928
1020
+
Ser
GCT
[ENA]
¢þ
>WENV182944362
OKVI01021556
[OKVI] human gut metagenome; human gut
214
306
+
Ser
GCT
[ENA]
¢þ
>WENV183090423
OLKA01000002
[OLKA] human gut metagenome; human gut
23456
23364
-
Ser
GCT
[ENA]
¢þ
>WENV183587406
OOCU01000131
[OOCU] human gut metagenome; human gut
21357
21265
-
Ser
GCT
[ENA]
¢þ
>WENV183790370
PPYF01411262
[PPYF] human gut metagenome; stool from patient with Crohn's disease
32204
32296
+
Ser
GCT
[ENA]
¢þ
>WENV170560647
CYGL01017160
[CYGL] human gut metagenome;
172
266
+
Ser
GCT
[ENA]
¢þ
>C191208478
LR134354
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC11817 [LR134354]
1692868
1692960
+
Ser
GCT
-
¡û
>W1910343121
FTRM01000007
Actinomycetota
Bifidobacterium longum [FTRM]
22588
22496
-
Ser
GCT
[ENA]
¡û
>W1910343194
FTRN01000008
Actinomycetota
Bifidobacterium longum [FTRN]
117601
117693
+
Ser
GCT
[ENA]
¡û
>W1910343403
FTRR01000007
Actinomycetota
Bifidobacterium longum [FTRR]
22538
22446
-
Ser
GCT
[ENA]
¡û
>C09102388
CP001095
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [CP001095]
1693074
1693168
+
Ser
GCT
-
¡û
>W1910923138
NIGS01000007
Actinomycetota
Bifidobacterium breve LMG S-29190 [NIGS]
190823
190731
-
Ser
GCT
[ENA]
¡û
>C151011266
CP006713
Actinomycetota
Bifidobacterium breve JCM 7019 [CP006713]
1112835
1112741
-
Ser
GCT
[Ensembl]
¡û
>W1510059605
CCWN01000030
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1206122787 [CCWN]
35953
36047
+
Ser
GCT
[ENA]
¡û
>W1510059671
CCWO01000040
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1307292462 [CCWO]
35910
36004
+
Ser
GCT
[ENA]
¡û
>W1510059738
CCWP01000035
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401111250 [CCWP]
35917
36011
+
Ser
GCT
[ENA]
¡û
>W1510059805
CCWQ01000029
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621b [CCWQ]
35917
36011
+
Ser
GCT
[ENA]
¡û
>W1510059871
CCWR01000022
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845a [CCWR]
117553
117647
+
Ser
GCT
[ENA]
¡û
>W1510059938
CCWS01000025
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621a [CCWS]
117581
117675
+
Ser
GCT
[ENA]
¡û
>W1510060005
CCWT01000030
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845b [CCWT]
35917
36011
+
Ser
GCT
[ENA]
¡û
>W1510060072
CCWU01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
117548
117642
+
Ser
GCT
[ENA]
¡û
>C11103167
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1692864
1692958
+
Ser
GCT
-
¡û
>C11103234
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1692864
1692958
+
Ser
GCT
-
¡û
>W1610027522
AVQD01000003
Actinomycetota
Bifidobacterium breve MCC 1128 [AVQD]
254787
254693
-
Ser
GCT
[ENA]
¡û
>W1610074918
BCXO01000038
Actinomycetota
Bifidobacterium breve [BCXO]
144210
144304
+
Ser
GCT
[ENA]
¡û
>W1610518921
JDTT01000047
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM DSM 20088 [JDTT]
24484
24390
-
Ser
GCT
[ENA]
¡û
>W1710023756
AVQD01000003
Actinomycetota
Bifidobacterium breve MCC 1128 [AVQD]
254787
254693
-
Ser
GCT
[ENA]
¡û
>W1710072733
BCXO01000038
Actinomycetota
Bifidobacterium breve [BCXO]
144210
144304
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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