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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323997 (30 seq.)
>W1710784799
LJHG01000185
Bacillota
Epulopiscium sp. SCG-B10WGA-EpuloB [LJHG]
964
888
-
Ile
GAT
[ENA]
¡û
>WENV180446784
OBXC01001289
[OBXC] human gut metagenome; faeces
1960
1885
-
Ile
GAT
[ENA]
¢þ
>WENV180455511
OBXO01006675
[OBXO] human gut metagenome; faeces
2029
2104
+
Ile
GAT
[ENA]
¢þ
>W08002188
ABEQ01000002
Bacillota
Candidatus Epulopiscium viviparus 'N.t. morphotype B' [ABEQ]
52671
52597
-
Ile
GAT
[ENA]
¡û
>W08002208
ABEQ01000043
Bacillota
Candidatus Epulopiscium viviparus 'N.t. morphotype B' [ABEQ]
25088
25014
-
Ile
GAT
[ENA]
¡û
>WENV182409643
OIFJ01000071
[OIFJ] human gut metagenome; stool
2386
2311
-
Ile
GAT
[ENA]
¢þ
>WENV182965829
OKWT01000382
[OKWT] human gut metagenome; stool
167
92
-
Ile
GAT
[ENA]
¢þ
>WENV183015190
OLEN01003663
[OLEN] human gut metagenome; human gut
1735
1660
-
Ile
GAT
[ENA]
¢þ
>WENV170784827
MDSO01000455
[MDSO] gut metagenome; Stomach gut content
4189
4113
-
Ile
GAT
[ENA]
¢þ
>WENV170784916
MDSO01067756
[MDSO] gut metagenome; Stomach gut content
440
364
-
Ile
GAT
[ENA]
¢þ
>WENV170784986
MDSO01145978
[MDSO] gut metagenome; Stomach gut content
116
191
+
Ile
GAT
[ENA]
¢þ
>WENV170785413
MDSP01040668
[MDSP] gut metagenome; Stomach gut content
660
587
-
Ile
GAT
[ENA]
¢þ
>WENV170785659
MDSP01244910
[MDSP] gut metagenome; Stomach gut content
173
97
-
Ile
GAT
[ENA]
¢þ
>WENV170785772
MDSP01367365
[MDSP] gut metagenome; Stomach gut content
263
338
+
Ile
GAT
[ENA]
¢þ
>C191128872
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
731804
731878
+
Ile
GAT
-
¡û
>C191128878
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
804182
804256
+
Ile
GAT
-
¡û
>C191128906
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
1840705
1840780
+
Ile
GAT
-
¡û
>C191128937
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
4373554
4373479
-
Ile
GAT
-
¡û
>W10118946
ADVF01000100
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
753
828
+
Ile
GAT
[ENA]
¡û
>W10118959
ADVF01000112
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
180
255
+
Ile
GAT
[ENA]
¡û
>W10118962
ADVF01000114
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
248
324
+
Ile
GAT
[ENA]
¡û
>C11105522
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
143298
143374
+
Ile
GAT
[Ensembl]
¡û
>C11105549
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
1230915
1230990
+
Ile
GAT
[Ensembl]
¡û
>C11105583
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3624030
3623955
-
Ile
GAT
[Ensembl]
¡û
>W1510725211
CXYW01000008
Bacillota
Niameybacter massiliensis mt14 [CXYW]
28683
28608
-
Ile
GAT
[ENA]
¡û
>W1510725258
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1966801
1966726
-
Ile
GAT
[ENA]
¡û
>W1510725290
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
382644
382569
-
Ile
GAT
[ENA]
¡û
>W11125118
ADVF01000100
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
753
828
+
Ile
GAT
[ENA]
¡û
>W11125131
ADVF01000112
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
180
255
+
Ile
GAT
[ENA]
¡û
>W11125134
ADVF01000114
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
248
324
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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