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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32420 (66 seq.)
>W1711229344
LXYI01000045
Alphaproteobacteria
Sulfitobacter sp. EhC04 [LXYI]
193060
193149
+
Ser
CGA
[ENA]
¡û
>W1711357115
MDHA01000009
Alphaproteobacteria
Thioclava sp. SK-1 [MDHA]
10875
10786
-
Ser
CGA
[ENA]
¡û
>W1711712869
MTCO01000285
Alphaproteobacteria
Brevirhabdus pacifica [MTCO]
20389
20478
+
Ser
CGA
[ENA]
¡û
>C018363
CP000362
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [CP000362]
2544628
2544717
+
Ser
CGA
[Ensembl]
¡û
>w014879
AAOT01000084
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
762
853
+
Ser
CGA
[ENA]
¡û
>w014852
AAOT01000018
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
16090
16181
+
Ser
CGA
[ENA]
¡û
>WENV180106590
OAPE01181002
[OAPE] marine metagenome; Sterivex cartridges
275
186
-
Ser
CGA
[ENA]
¢þ
>WENV180392556
OBPO01130683
[OBPO] marine metagenome; seawater
15
104
+
Ser
CGA
[ENA]
¢þ
>W141043748
AMGO01000004
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
12872
12961
+
Ser
CGA
[ENA]
¡û
>W141055793
AOSK01000130
Alphaproteobacteria
Rubellimicrobium mesophilum DSM 19309 [AOSK]
110645
110734
+
Ser
CGA
[ENA]
¡û
>WENV180639035
OCRI01091378
[OCRI] marine metagenome; Sterile flask
368
279
-
Ser
CGA
[ENA]
¢þ
>WENV181306794
OFIM01014619
[OFIM] marine metagenome; seawater
76
165
+
Ser
CGA
[ENA]
¢þ
>W141151686
AXBG01000008
Alphaproteobacteria
Sedimentitalea nanhaiensis DSM 24252 [AXBG]
361367
361456
+
Ser
CGA
[ENA]
¡û
>W08011256
ABSK01000047
Alphaproteobacteria
Octadecabacter arcticus 238 [ABSK]
47162
47251
+
Ser
CGA
[ENA]
¡û
>WENV182547734
OJBT01001636
[OJBT] seawater metagenome; Sea water
734
645
-
Ser
CGA
[ENA]
¢þ
>WENV182551106
OJCB01021328
[OJCB] seawater metagenome; Sea water
381
470
+
Ser
CGA
[ENA]
¢þ
>WENV182563300
OJEB01005958
[OJEB] seawater metagenome; Sea water
518
607
+
Ser
CGA
[ENA]
¢þ
>WENV182567587
OJEO01011168
[OJEO] seawater metagenome; Sea water
245
334
+
Ser
CGA
[ENA]
¢þ
>WENV182568973
OJEX01014678
[OJEX] seawater metagenome; Sea water
34
123
+
Ser
CGA
[ENA]
¢þ
>WENV182570091
OJFB01010870
[OJFB] seawater metagenome; Sea water
827
916
+
Ser
CGA
[ENA]
¢þ
>WENV182572825
OJFM01023030
[OJFM] seawater metagenome; Sea water
528
439
-
Ser
CGA
[ENA]
¢þ
>WENV182587463
OJHM01008620
[OJHM] seawater metagenome; Sea water
1016
1105
+
Ser
CGA
[ENA]
¢þ
>W141290200
JASE01000005
Alphaproteobacteria
Sulfitobacter geojensis MM-124 [JASE]
2283868
2283957
+
Ser
CGA
[ENA]
¡û
>W141290308
JASH01000001
Alphaproteobacteria
Sulfitobacter mediterraneus KCTC 32188 [JASH]
150830
150741
-
Ser
CGA
[ENA]
¡û
>WENV183057218
OLHK01018621
[OLHK] seawater metagenome; Sea water
115
204
+
Ser
CGA
[ENA]
¢þ
>WENV183617231
OOEE01108143
[OOEE] marine metagenome; sea ice
261
172
-
Ser
CGA
[ENA]
¢þ
>WENV183627934
OOGL01085091
[OOGL] marine metagenome; sea ice
394
305
-
Ser
CGA
[ENA]
¢þ
>WENV170022294
BCQK01004303
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1987
1898
-
Ser
CGA
[ENA]
¢þ
>WENV170611427
FUWD012304961
[FUWD] metagenome; unknown
95
6
-
Ser
CGA
[ENA]
¢þ
>WENV170683570
LFIK01015898
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
27
116
+
Ser
CGA
[ENA]
¢þ
>C181123362
CP025804
Alphaproteobacteria
Sulfitobacter sp. SK012 [CP025804]
2295154
2295065
-
Ser
CGA
-
¡û
>C181152281
CP027407
Alphaproteobacteria
Roseobacter denitrificans FDAARGOS_309 [CP027407]
567748
567837
+
Ser
CGA
-
¡û
>C191160526
CP038492
Alphaproteobacteria
Rhodophyticola sp. CCM32 [CP038492]
1249542
1249453
-
Ser
CGA
-
¡û
>W141562455
JHZF01000011
Alphaproteobacteria
Pseudooceanicola nanhaiensis DSM 18065 [JHZF]
886377
886466
+
Ser
CGA
[ENA]
¡û
>W1910442701
FWFL01000001
Alphaproteobacteria
Roseovarius litorisediminis CECT 8287 [FWFL]
234076
233987
-
Ser
CGA
[ENA]
¡û
>W1910468975
FWXB01000004
Alphaproteobacteria
Roseovarius aestuarii CECT 7745 [FWXB]
68015
68104
+
Ser
CGA
[ENA]
¡û
>W1910499035
FXXP01000002
Alphaproteobacteria
Pelagimonas phthalicica CECT 8649 [FXXP]
284234
284145
-
Ser
CGA
[ENA]
¡û
>W1911081206
NMZM01000001
Alphaproteobacteria
Oceaniglobus indicus 1-19b [NMZM]
527855
527944
+
Ser
CGA
[ENA]
¡û
>W1911539293
OMPR01000017
Alphaproteobacteria
Rhodobacteraceae bacterium EL53 [OMPR]
310563
310474
-
Ser
CGA
[ENA]
¡û
>W1911539375
OMPT01000010
Alphaproteobacteria
Sulfitobacter mediterraneus EL44 [OMPT]
791748
791837
+
Ser
CGA
[ENA]
¡û
>W1911539764
ONZF01000001
Alphaproteobacteria
Palleronia abyssalis CECT 8504 [ONZF]
12583
12494
-
Ser
CGA
[ENA]
¡û
>W1911652521
QBBT01000040
Alphaproteobacteria
Pseudooceanicola algae Lw-13e [QBBT]
224911
224822
-
Ser
CGA
[ENA]
¡û
>W1911749898
QWJJ01000001
Alphaproteobacteria
Pseudooceanicola sediminis CY03 [QWJJ]
188065
188154
+
Ser
CGA
[ENA]
¡û
>W1810090249
PGFI01000011
Alphaproteobacteria
Brevirhabdus pacifica DSM 27767 [PGFI]
1545978
1546067
+
Ser
CGA
[ENA]
¡û
>W1810102043
PGTY01000001
Alphaproteobacteria
Yoonia maricola DSM 29128 [PGTY]
598831
598742
-
Ser
CGA
[ENA]
¡û
>W1810464020
QAAA01000002
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [QAAA]
100699
100788
+
Ser
CGA
[ENA]
¡û
>W1810471789
QAGK01000006
Alphaproteobacteria
Oceaniglobus ichthyenteri YLY08 [QAGK]
219760
219849
+
Ser
CGA
[ENA]
¡û
>W1810494735
QBFD01000046
Alphaproteobacteria
Sulfitobacter sp. DFL-14 [QBFD]
856537
856626
+
Ser
CGA
[ENA]
¡û
>W1810514042
QBUD01000009
Alphaproteobacteria
Yoonia sediminilitoris DSM 29955 [QBUD]
2042
1953
-
Ser
CGA
[ENA]
¡û
>W1810532485
QCYH01000016
Alphaproteobacteria
Pelagivirga sediminicola BH-SD19 [QCYH]
39805
39894
+
Ser
CGA
[ENA]
¡û
>W1810543578
QDKM01000001
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
463734
463823
+
Ser
CGA
[ENA]
¡û
>W1810584023
QEYE01000006
Alphaproteobacteria
Maritimibacter sp. 55A14 [QEYE]
188464
188553
+
Ser
CGA
[ENA]
¡û
>W1810584269
QFAR01000001
Alphaproteobacteria
Pelagicola sp. LXJ1103 [QFAR]
831361
831450
+
Ser
CGA
[ENA]
¡û
>W1810685652
QKZL01000001
Alphaproteobacteria
Palleronia aestuarii DSM 22009 [QKZL]
329057
328968
-
Ser
CGA
[ENA]
¡û
>W1810719927
QNQP01000004
Alphaproteobacteria
Roseovarius dicentrarchi YLY04 [QNQP]
191299
191388
+
Ser
CGA
[ENA]
¡û
>W1810759661
QPJP01000009
Alphaproteobacteria
Yoonia sediminilitoris CECT 8284 [QPJP]
2042
1953
-
Ser
CGA
[ENA]
¡û
>C131005970
CP003742
Alphaproteobacteria
Octadecabacter arcticus 238 [CP003742]
1472768
1472857
+
Ser
CGA
[Ensembl]
¡û
>W1610628523
LIGP01000001
Alphaproteobacteria
Loktanella sp. 1ANDIMAR09 [LIGP]
739652
739563
-
Ser
CGA
[ENA]
¡û
>W1611013214
LXYI01000045
Alphaproteobacteria
Sulfitobacter sp. EhC04 [LXYI]
193060
193149
+
Ser
CGA
[ENA]
¡û
>W1710015523
AQQT01000001
Alphaproteobacteria
Loktanella sp. 22II-4b [AQQT]
435886
435797
-
Ser
CGA
[ENA]
¡û
>W1710543604
FOAC01000002
Alphaproteobacteria
Roseovarius nanhaiticus [FOAC]
179421
179510
+
Ser
CGA
[ENA]
¡û
>W1710555088
FOJB01000001
Alphaproteobacteria
Aliiroseovarius sediminilitoris [FOJB]
1760343
1760254
-
Ser
CGA
[ENA]
¡û
>W1710561995
FOOO01000002
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [FOOO]
171520
171609
+
Ser
CGA
[ENA]
¡û
>W1710577508
FPAW01000005
Alphaproteobacteria
Sedimentitalea nanhaiensis [FPAW]
195536
195625
+
Ser
CGA
[ENA]
¡û
>W1710598225
FTNV01000003
Alphaproteobacteria
Roseovarius nanhaiticus [FTNV]
364444
364355
-
Ser
CGA
[ENA]
¡û
>W1710606876
FWYD01000001
Alphaproteobacteria
Primorskyibacter flagellatus [FWYD]
397318
397407
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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