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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32667 (31 seq.)
>W1711024771
LRBG01000001
Betaproteobacteria
Paraburkholderia monticola [LRBG]
466714
466624
-
Ser
GGA
[ENA]
¡û
>W1711208453
LXGI01000078
Betaproteobacteria
Paraburkholderia tropica [LXGI]
2590
2500
-
Ser
GGA
[ENA]
¡û
>W1711792397
MWJQ01000004
Betaproteobacteria
Burkholderia sp. A27 [MWJQ]
37890
37800
-
Ser
GGA
[ENA]
¡û
>W1712077272
NGUT01000057
Betaproteobacteria
Paraburkholderia caledonica [NGUT]
16808
16898
+
Ser
GGA
[ENA]
¡û
>W1712081839
NHOM01000006
Betaproteobacteria
Burkholderia sp. Bk [NHOM]
115086
115176
+
Ser
GGA
[ENA]
¡û
>C171063579
CP017561
Betaproteobacteria
Paraburkholderia sprentiae WSM5005 [CP017561, CP017562]
1707776
1707686
-
Ser
GGA
-
¡û
>W131167015
ARCY01000009
Betaproteobacteria
Paraburkholderia tuberum WSM4176 [ARCY]
359315
359225
-
Ser
GGA
[ENA]
¡û
>W131184526
ARSZ01000024
Betaproteobacteria
Paraburkholderia caledonica 376MFSha3.1 [ARSZ]
135075
134985
-
Ser
GGA
[ENA]
¡û
>C004865
CP000270
Betaproteobacteria
Paraburkholderia xenovorans LB400 [CP000270, CP000271, CP000272]
1498715
1498805
+
Ser
GGA
[Ensembl]
¡û
>w019552
AAUG01000030
Betaproteobacteria
Paraburkholderia phymatum STM815 [AAUG]
1246
1154
-
Ser
GGA
[ENA]
¡û
>WENV180026642
FTIU01008399
[FTIU] metagenome; soil
91
1
-
Ser
GGA
[ENA]
¢þ
>WENV180029906
FTJL01017636
[FTJL] metagenome; soil
784
694
-
Ser
GGA
[ENA]
¢þ
>W141152068
AXBN01000070
Betaproteobacteria
Paraburkholderia sprentiae WSM5005 [AXBN]
33737
33827
+
Ser
GGA
[ENA]
¡û
>W141235601
BAYE01000014
Betaproteobacteria
Paraburkholderia caledonica NBRC 102488 [BAYE]
111242
111332
+
Ser
GGA
[ENA]
¡û
>C08001984
CP001043
Betaproteobacteria
Paraburkholderia phymatum STM815 [CP001043, CP001044]
2119556
2119646
+
Ser
GGA
[Ensembl]
¡û
>C181108285
CP024905
Betaproteobacteria
Paraburkholderia caledonica PHRS4 [CP024905, CP024906]
2446129
2446039
-
Ser
GGA
-
¡û
>C181109117
CP024941
Betaproteobacteria
Paraburkholderia terricola mHS1 [CP024941, CP024942]
1253801
1253891
+
Ser
GGA
-
¡û
>W09100094
AAAJ03000011
Betaproteobacteria
Paraburkholderia xenovorans LB400 [AAAJ]
222733
222643
-
Ser
GGA
[ENA]
¡û
>W1810577217
QEOB01000045
Betaproteobacteria
Paraburkholderia unamae SCZa-39 [QEOB]
49208
49298
+
Ser
GGA
[ENA]
¡û
>W1810628716
QICR01000013
Betaproteobacteria
Paraburkholderia sp. OV446 [QICR]
112694
112784
+
Ser
GGA
[ENA]
¡û
>W1810695862
QLSU01000036
Betaproteobacteria
Paraburkholderia unamae CATux-332 [QLSU]
49357
49267
-
Ser
GGA
[ENA]
¡û
>C151036850
CP008760
Betaproteobacteria
Paraburkholderia xenovorans LB400 [CP008760, CP008761, CP008762]
845485
845395
-
Ser
GGA
[Ensembl]
¡û
>W10116342
ADNR01000089
Betaproteobacteria
Burkholderia sp. Ch1-1 [ADNR]
7992
8082
+
Ser
GGA
[ENA]
¡û
>W11121011
ADNR01000089
Betaproteobacteria
Burkholderia sp. Ch1-1 [ADNR]
7992
8082
+
Ser
GGA
[ENA]
¡û
>W1511534649
JYOD01000005
Betaproteobacteria
Burkholderiaceae bacterium 16 [JYOD]
23718
23628
-
Ser
GGA
[ENA]
¡û
>W1610538091
JRTU01000013
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRTU]
11183
11273
+
Ser
GGA
[ENA]
¡û
>W1610872883
LRBG01000001
Betaproteobacteria
Paraburkholderia monticola [LRBG]
466714
466624
-
Ser
GGA
[ENA]
¡û
>W1610996215
LXGI01000078
Betaproteobacteria
Paraburkholderia tropica [LXGI]
2590
2500
-
Ser
GGA
[ENA]
¡û
>W1710524541
FNIU01000038
Betaproteobacteria
Paraburkholderia sediminicola [FNIU]
33611
33701
+
Ser
GGA
[ENA]
¡û
>W1710589343
FRAB01000037
Betaproteobacteria
Paraburkholderia terricola [FRAB]
33357
33447
+
Ser
GGA
[ENA]
¡û
>W1710640560
JRTU01000013
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRTU]
11183
11273
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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