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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3271 (125 seq.)
>W131144869
AQFS01000073
Bacillota
Ligilactobacillus murinus ASF361 [AQFS]
1625
1718
+
Ser
GGA
[ENA]
¡û
>W1711147982
LVKC01000055
Bacillota
Ligilactobacillus aviarius [LVKC]
213
306
+
Ser
GGA
[ENA]
¡û
>W1711148007
LVKD01000033
Bacillota
Ligilactobacillus aviarius [LVKD]
289
382
+
Ser
GGA
[ENA]
¡û
>W1711148060
LVKE01000023
Bacillota
Ligilactobacillus aviarius [LVKE]
355
448
+
Ser
GGA
[ENA]
¡û
>W1711148103
LVKF01000010
Bacillota
Ligilactobacillus aviarius [LVKF]
44970
44877
-
Ser
GGA
[ENA]
¡û
>W1711148210
LVKG01000063
Bacillota
Ligilactobacillus aviarius [LVKG]
44970
44877
-
Ser
GGA
[ENA]
¡û
>W1711148242
LVKH01000025
Bacillota
Ligilactobacillus aviarius [LVKH]
10458
10365
-
Ser
GGA
[ENA]
¡û
>W1711148312
LVKI01000032
Bacillota
Ligilactobacillus aviarius [LVKI]
10351
10258
-
Ser
GGA
[ENA]
¡û
>W1711148351
LVKJ01000011
Bacillota
Ligilactobacillus aviarius [LVKJ]
23705
23612
-
Ser
GGA
[ENA]
¡û
>W1711192845
LWUC01000011
Bacillota
Ligilactobacillus aviarius [LWUC]
10789
10696
-
Ser
GGA
[ENA]
¡û
>W1711192933
LWUD01000020
Bacillota
Ligilactobacillus aviarius [LWUD]
301
394
+
Ser
GGA
[ENA]
¡û
>W1711192961
LWUE01000015
Bacillota
Ligilactobacillus aviarius [LWUE]
257
350
+
Ser
GGA
[ENA]
¡û
>W1711193055
LWUF01000040
Bacillota
Ligilactobacillus aviarius [LWUF]
382
475
+
Ser
GGA
[ENA]
¡û
>W1711193106
LWUG01000032
Bacillota
Ligilactobacillus aviarius [LWUG]
10720
10627
-
Ser
GGA
[ENA]
¡û
>W1711345194
MCNR01000004
Bacillota
Ligilactobacillus animalis [MCNR]
66923
66830
-
Ser
GGA
[ENA]
¡û
>W1711632499
MPSN01000001
Bacillota
Ligilactobacillus murinus [MPSN]
77186
77093
-
Ser
GGA
[ENA]
¡û
>WENV181236673
OFEZ01004829
[OFEZ] mouse gut metagenome; faeces
2287
2194
-
Ser
GGA
[ENA]
¢þ
>WENV181240879
OFFE01013184
[OFFE] mouse gut metagenome; faeces
2287
2194
-
Ser
GGA
[ENA]
¢þ
>WENV181243043
OFFG01011609
[OFFG] mouse gut metagenome; faeces
545
638
+
Ser
GGA
[ENA]
¢þ
>WENV181244599
OFFI01000319
[OFFI] mouse gut metagenome; faeces
615
708
+
Ser
GGA
[ENA]
¢þ
>WENV181247347
OFFK01018358
[OFFK] mouse gut metagenome; faeces
2287
2194
-
Ser
GGA
[ENA]
¢þ
>WENV181252371
OFFP01014892
[OFFP] mouse gut metagenome; faeces
2287
2194
-
Ser
GGA
[ENA]
¢þ
>WENV181254495
OFFR01011829
[OFFR] mouse gut metagenome; faeces
2287
2194
-
Ser
GGA
[ENA]
¢þ
>WENV181255605
OFFS01009535
[OFFS] mouse gut metagenome; faeces
143
236
+
Ser
GGA
[ENA]
¢þ
>WENV181256614
OFFT01013589
[OFFT] mouse gut metagenome; faeces
143
236
+
Ser
GGA
[ENA]
¢þ
>WENV181257365
OFFU01000747
[OFFU] mouse gut metagenome; faeces
29576
29483
-
Ser
GGA
[ENA]
¢þ
>WENV181262678
OFFY01015749
[OFFY] mouse gut metagenome; faeces
143
236
+
Ser
GGA
[ENA]
¢þ
>WENV181263803
OFFZ01017273
[OFFZ] mouse gut metagenome; faeces
6
99
+
Ser
GGA
[ENA]
¢þ
>WENV181265024
OFGA01018963
[OFGA] mouse gut metagenome; faeces
2287
2194
-
Ser
GGA
[ENA]
¢þ
>WENV181268500
OFGD01013369
[OFGD] mouse gut metagenome; faeces
2287
2194
-
Ser
GGA
[ENA]
¢þ
>WENV181269977
OFGE01017033
[OFGE] mouse gut metagenome; faeces
2287
2194
-
Ser
GGA
[ENA]
¢þ
>WENV181271242
OFGF01013049
[OFGF] mouse gut metagenome; faeces
2287
2194
-
Ser
GGA
[ENA]
¢þ
>WENV181272467
OFGG01015234
[OFGG] mouse gut metagenome; faeces
143
236
+
Ser
GGA
[ENA]
¢þ
>WENV181273842
OFGH01011715
[OFGH] mouse gut metagenome; faeces
614
707
+
Ser
GGA
[ENA]
¢þ
>WENV181276558
OFGK01009109
[OFGK] mouse gut metagenome; faeces
141
234
+
Ser
GGA
[ENA]
¢þ
>WENV181279909
OFGN01009658
[OFGN] mouse gut metagenome; faeces
143
236
+
Ser
GGA
[ENA]
¢þ
>WENV181281143
OFGO01012636
[OFGO] mouse gut metagenome; faeces
2286
2193
-
Ser
GGA
[ENA]
¢þ
>WENV181283733
OFGQ01016088
[OFGQ] mouse gut metagenome; faeces
2286
2193
-
Ser
GGA
[ENA]
¢þ
>WENV181290253
OFHA01016013
[OFHA] mouse gut metagenome; faeces
143
236
+
Ser
GGA
[ENA]
¢þ
>WENV181299613
OFHM01017903
[OFHM] mouse gut metagenome; faeces
143
236
+
Ser
GGA
[ENA]
¢þ
>WENV181303417
OFHP01012364
[OFHP] mouse gut metagenome; faeces
143
236
+
Ser
GGA
[ENA]
¢þ
>WENV181356499
OFMU01000098
[OFMU] human gut metagenome; human gut
66336
66243
-
Ser
GGA
[ENA]
¢þ
>W141227577
BALC01000009
Bacillota
Liquorilactobacillus sucicola JCM 15457 [BALC]
75259
75166
-
Ser
GGA
[ENA]
¡û
>WENV183283198
OLSD01000202
[OLSD] human gut metagenome; faeces
584
677
+
Ser
GGA
[ENA]
¢þ
>WENV183723005
PDYJ01000024
[PDYJ] gut metagenome; fecal pellets
22270
22363
+
Ser
GGA
[ENA]
¢þ
>C181020756
CP016766
Bacillota
Ligilactobacillus agilis La3 [CP016766]
1381692
1381599
-
Ser
GGA
-
¡û
>C181084735
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
1246771
1246678
-
Ser
GGA
-
¡û
>C181084791
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
1069130
1069223
+
Ser
GGA
-
¡û
>C191015303
CP018176
Bacillota
Liquorilactobacillus hordei TMW 1.1822 [CP018176]
1742692
1742599
-
Ser
GGA
-
¡û
>C191172073
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
566518
566611
+
Ser
GGA
-
¡û
>W141699193
JMHU01000026
Bacillota
Ligilactobacillus animalis [JMHU]
66575
66482
-
Ser
GGA
[ENA]
¡û
>W1910611585
LFJL01000002
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
19083
18990
-
Ser
GGA
[ENA]
¡û
>W1910611686
LFJM01000037
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
19083
18990
-
Ser
GGA
[ENA]
¡û
>W1910642931
LUGD01000036
Bacillota
Ligilactobacillus agilis UMNLA4 [LUGD]
26582
26489
-
Ser
GGA
[ENA]
¡û
>W1910643008
LUGE01000034
Bacillota
Ligilactobacillus agilis UMNLA5 [LUGE]
26585
26492
-
Ser
GGA
[ENA]
¡û
>W1910643159
LUGO01000083
Bacillota
Ligilactobacillus agilis UMNLA1 [LUGO]
266
359
+
Ser
GGA
[ENA]
¡û
>W1910643233
LUGP01000085
Bacillota
Ligilactobacillus agilis UMNLA2 [LUGP]
26582
26489
-
Ser
GGA
[ENA]
¡û
>W1910643251
LUGQ01000042
Bacillota
Ligilactobacillus agilis UMNLA3 [LUGQ]
301
394
+
Ser
GGA
[ENA]
¡û
>W1910652389
LYQO01000096
Bacillota
Ligilactobacillus agilis UMNLA6 [LYQO]
26582
26489
-
Ser
GGA
[ENA]
¡û
>W1910652487
LYQP01000095
Bacillota
Ligilactobacillus agilis UMNLA7 [LYQP]
26724
26631
-
Ser
GGA
[ENA]
¡û
>W1910652509
LYQQ01000035
Bacillota
Ligilactobacillus agilis UMNLA8 [LYQQ]
477
570
+
Ser
GGA
[ENA]
¡û
>W1911754048
QWMU01000142
Bacillota
Ligilactobacillus murinus 510-9 [QWMU]
2304
2211
-
Ser
GGA
[ENA]
¡û
>W1911814450
QZFR01000047
Bacillota
Ligilactobacillus murinus C-30 [QZFR]
160
253
+
Ser
GGA
[ENA]
¡û
>W1810050004
PCZO01000030
Bacillota
Ligilactobacillus aviarius UMNLAv98 [PCZO]
45207
45114
-
Ser
GGA
[ENA]
¡û
>W1810050090
PCZP01000050
Bacillota
Ligilactobacillus aviarius UMNLAv97 [PCZP]
403
496
+
Ser
GGA
[ENA]
¡û
>W1810050144
PCZQ01000045
Bacillota
Ligilactobacillus aviarius UMNLAv76 [PCZQ]
44969
44876
-
Ser
GGA
[ENA]
¡û
>W1810225300
POVP01000016
Bacillota
Ligilactobacillus animalis NP51 [POVP]
86
179
+
Ser
GGA
[ENA]
¡û
>W1510650395
CVQY01000026
Bacillota
Ligilactobacillus agilis Marseille [CVQY]
128967
128874
-
Ser
GGA
[ENA]
¡û
>W11184904
BACP01000063
Bacillota
Liquorilactobacillus mali KCTC 3596 [BACP]
96
189
+
Ser
GGA
[ENA]
¡û
>W121044010
AHYZ01000196
Bacillota
Liquorilactobacillus vini DSM 20605 [AHYZ]
212
307
+
Ser
GGA
[ENA]
¡û
>W121087001
AKKT01000098
Bacillota
Liquorilactobacillus mali KCTC 3596 = DSM 20444 [AKKT]
301
208
-
Ser
GGA
[ENA]
¡û
>W1610030833
AYYH01000190
Bacillota
Liquorilactobacillus mali KCTC 3596 = DSM 20444 [AYYH]
126
219
+
Ser
GGA
[ENA]
¡û
>W1610031053
AYYN01000106
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
142
235
+
Ser
GGA
[ENA]
¡û
>W1610031194
AYYP01000060
Bacillota
Ligilactobacillus agilis DSM 20509 [AYYP]
356
449
+
Ser
GGA
[ENA]
¡û
>W1610031534
AYYW01000042
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
65
158
+
Ser
GGA
[ENA]
¡û
>W1610031655
AYYZ01000029
Bacillota
Ligilactobacillus araffinosus subsp. araffinosus DSM 20653 [AYYZ]
62
155
+
Ser
GGA
[ENA]
¡û
>W1610031692
AYZA01000022
Bacillota
Ligilactobacillus aviarius subsp. aviarius DSM 20655 [AYZA]
62
155
+
Ser
GGA
[ENA]
¡û
>W1610031833
AYZD01000023
Bacillota
Liquorilactobacillus aquaticus DSM 21051 [AYZD]
73632
73539
-
Ser
GGA
[ENA]
¡û
>W1610031882
AYZE01000010
Bacillota
Liquorilactobacillus cacaonum DSM 21116 [AYZE]
155
248
+
Ser
GGA
[ENA]
¡û
>W1610031939
AYZF01000011
Bacillota
Liquorilactobacillus sucicola DSM 21376 = JCM 15457 [AYZF]
144
237
+
Ser
GGA
[ENA]
¡û
>W1610034674
AZDX01000094
Bacillota
Liquorilactobacillus hordei DSM 19519 [AZDX]
154
247
+
Ser
GGA
[ENA]
¡û
>W1610035062
AZEF01000010
Bacillota
Liquorilactobacillus capillatus DSM 19910 [AZEF]
141
234
+
Ser
GGA
[ENA]
¡û
>W1610035134
AZEG01000049
Bacillota
Liquorilactobacillus uvarum DSM 19971 [AZEG]
7765
7672
-
Ser
GGA
[ENA]
¡û
>W1610035200
AZEH01000042
Bacillota
Liquorilactobacillus oeni DSM 19972 [AZEH]
196
289
+
Ser
GGA
[ENA]
¡û
>W1610035886
AZEV01000043
Bacillota
Liquorilactobacillus nagelii DSM 13675 [AZEV]
149
242
+
Ser
GGA
[ENA]
¡û
>W1610036871
AZFQ01000043
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [AZFQ]
150
243
+
Ser
GGA
[ENA]
¡û
>W1610037023
AZFT01000031
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
67903
67810
-
Ser
GGA
[ENA]
¡û
>W1610037498
AZGB01000029
Bacillota
Liquorilactobacillus ghanensis DSM 18630 [AZGB]
148
241
+
Ser
GGA
[ENA]
¡û
>W1610046724
BBCQ01000087
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [BBCQ]
95
188
+
Ser
GGA
[ENA]
¡û
>W1610072840
BCVJ01000124
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
7
100
+
Ser
GGA
[ENA]
¡û
>W1610527779
JQAR01000014
Bacillota
Liquorilactobacillus mali [JQAR]
152
245
+
Ser
GGA
[ENA]
¡û
>W1610958713
LVKC01000055
Bacillota
Ligilactobacillus aviarius [LVKC]
213
306
+
Ser
GGA
[ENA]
¡û
>W1610958738
LVKD01000033
Bacillota
Ligilactobacillus aviarius [LVKD]
289
382
+
Ser
GGA
[ENA]
¡û
>W1610958791
LVKE01000023
Bacillota
Ligilactobacillus aviarius [LVKE]
355
448
+
Ser
GGA
[ENA]
¡û
>W1610958834
LVKF01000010
Bacillota
Ligilactobacillus aviarius [LVKF]
44970
44877
-
Ser
GGA
[ENA]
¡û
>W1610958941
LVKG01000063
Bacillota
Ligilactobacillus aviarius [LVKG]
44970
44877
-
Ser
GGA
[ENA]
¡û
>W1610958973
LVKH01000025
Bacillota
Ligilactobacillus aviarius [LVKH]
10458
10365
-
Ser
GGA
[ENA]
¡û
>W1610959043
LVKI01000032
Bacillota
Ligilactobacillus aviarius [LVKI]
10351
10258
-
Ser
GGA
[ENA]
¡û
>W1610959082
LVKJ01000011
Bacillota
Ligilactobacillus aviarius [LVKJ]
23705
23612
-
Ser
GGA
[ENA]
¡û
>W1610993608
LWUC01000011
Bacillota
Ligilactobacillus aviarius [LWUC]
10789
10696
-
Ser
GGA
[ENA]
¡û
>W1610993696
LWUD01000020
Bacillota
Ligilactobacillus aviarius [LWUD]
301
394
+
Ser
GGA
[ENA]
¡û
>W1610993724
LWUE01000015
Bacillota
Ligilactobacillus aviarius [LWUE]
257
350
+
Ser
GGA
[ENA]
¡û
>W1610993818
LWUF01000040
Bacillota
Ligilactobacillus aviarius [LWUF]
382
475
+
Ser
GGA
[ENA]
¡û
>W1610993869
LWUG01000032
Bacillota
Ligilactobacillus aviarius [LWUG]
10720
10627
-
Ser
GGA
[ENA]
¡û
>W1710027785
AYYH01000190
Bacillota
Liquorilactobacillus mali KCTC 3596 = DSM 20444 [AYYH]
126
219
+
Ser
GGA
[ENA]
¡û
>W1710028005
AYYN01000106
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
142
235
+
Ser
GGA
[ENA]
¡û
>W1710028146
AYYP01000060
Bacillota
Ligilactobacillus agilis DSM 20509 [AYYP]
356
449
+
Ser
GGA
[ENA]
¡û
>W1710028461
AYYW01000042
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
65
158
+
Ser
GGA
[ENA]
¡û
>W1710028582
AYYZ01000029
Bacillota
Ligilactobacillus araffinosus subsp. araffinosus DSM 20653 [AYYZ]
62
155
+
Ser
GGA
[ENA]
¡û
>W1710028619
AYZA01000022
Bacillota
Ligilactobacillus aviarius subsp. aviarius DSM 20655 [AYZA]
62
155
+
Ser
GGA
[ENA]
¡û
>W1710028760
AYZD01000023
Bacillota
Liquorilactobacillus aquaticus DSM 21051 [AYZD]
73632
73539
-
Ser
GGA
[ENA]
¡û
>W1710028809
AYZE01000010
Bacillota
Liquorilactobacillus cacaonum DSM 21116 [AYZE]
155
248
+
Ser
GGA
[ENA]
¡û
>W1710028866
AYZF01000011
Bacillota
Liquorilactobacillus sucicola DSM 21376 = JCM 15457 [AYZF]
144
237
+
Ser
GGA
[ENA]
¡û
>W1710031801
AZDX01000094
Bacillota
Liquorilactobacillus hordei DSM 19519 [AZDX]
154
247
+
Ser
GGA
[ENA]
¡û
>W1710032189
AZEF01000010
Bacillota
Liquorilactobacillus capillatus DSM 19910 [AZEF]
141
234
+
Ser
GGA
[ENA]
¡û
>W1710032261
AZEG01000049
Bacillota
Liquorilactobacillus uvarum DSM 19971 [AZEG]
7765
7672
-
Ser
GGA
[ENA]
¡û
>W1710032327
AZEH01000042
Bacillota
Liquorilactobacillus oeni DSM 19972 [AZEH]
196
289
+
Ser
GGA
[ENA]
¡û
>W1710032925
AZEV01000043
Bacillota
Liquorilactobacillus nagelii DSM 13675 [AZEV]
149
242
+
Ser
GGA
[ENA]
¡û
>W1710033910
AZFQ01000043
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [AZFQ]
150
243
+
Ser
GGA
[ENA]
¡û
>W1710034062
AZFT01000031
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
67903
67810
-
Ser
GGA
[ENA]
¡û
>W1710034537
AZGB01000029
Bacillota
Liquorilactobacillus ghanensis DSM 18630 [AZGB]
148
241
+
Ser
GGA
[ENA]
¡û
>W1710043467
BBCQ01000087
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [BBCQ]
95
188
+
Ser
GGA
[ENA]
¡û
>W1710069958
BCVJ01000124
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
7
100
+
Ser
GGA
[ENA]
¡û
>W1710081643
BDFM01000342
Bacillota
Ligilactobacillus murinus [BDFM]
2573
2480
-
Ser
GGA
[ENA]
¡û
>W1710629410
JQAR01000014
Bacillota
Liquorilactobacillus mali [JQAR]
152
245
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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