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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.327598 (92 seq.)
>W131062842
ANKE01000596
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp41 [ANKE]
4474
4400
-
Lys
CTT
[ENA]
¡û
>W131063461
ANKW01000046
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp122 [ANKW]
813
739
-
Lys
CTT
[ENA]
¡û
>W131063576
ANKY01000138
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp230 [ANKY]
278358
278432
+
Lys
CTT
[ENA]
¡û
>W1711229959
LXZG01000081
Bacillota
Ligilactobacillus salivarius [LXZG]
7268
7192
-
Lys
CTT
[ENA]
¡û
>W1711229991
LXZG01000100
Bacillota
Ligilactobacillus salivarius [LXZG]
94326
94402
+
Lys
CTT
[ENA]
¡û
>W1711484776
MKDD01000006
Bacillota
Latilactobacillus sakei [MKDD]
33440
33516
+
Lys
CTT
[ENA]
¡û
>W1711798438
MWVE01000015
Bacillota
Lacticaseibacillus paracasei casei [MWVE]
261
187
-
Lys
CTT
[ENA]
¡û
>W1711943458
NBDX01000006
Bacillota
Ligilactobacillus salivarius [NBDX]
94102
94026
-
Lys
CTT
[ENA]
¡û
>W1711943459
NBDX01000006
Bacillota
Ligilactobacillus salivarius [NBDX]
85135
85059
-
Lys
CTT
[ENA]
¡û
>C171048907
CP016400
Bacillota
Lactobacillus johnsonii BS15 [CP016400]
1383192
1383117
-
Lys
CTT
-
¡û
>C171048908
CP016400
Bacillota
Lactobacillus johnsonii BS15 [CP016400]
1381513
1381439
-
Lys
CTT
-
¡û
>W141004474
AFYL01000038
Bacillota
Lacticaseibacillus paracasei 32G [AFYL]
59514
59440
-
Lys
CTT
[ENA]
¡û
>WENV180177706
OAWF01000428
[OAWF] human gut metagenome; faeces
3417
3343
-
Lys
CTT
[ENA]
¢þ
>WENV180408644
OBUT01000006
[OBUT] human gut metagenome; faeces
381303
381229
-
Lys
CTT
[ENA]
¢þ
>W141094706
AVCU01000058
Bacillota
Lactobacillus jensenii MD IIE-70(2) [AVCU]
8895
8820
-
Lys
CTT
[ENA]
¡û
>W141094707
AVCU01000058
Bacillota
Lactobacillus jensenii MD IIE-70(2) [AVCU]
4718
4643
-
Lys
CTT
[ENA]
¡û
>WENV181131294
OEGB01000002
[OEGB] human metagenome; G_DNA_Posterior fornix
69693
69619
-
Lys
CTT
[ENA]
¢þ
>WENV181131299
OEGB01000004
[OEGB] human metagenome; G_DNA_Posterior fornix
20533
20606
+
Lys
CTT
[ENA]
¢þ
>WENV181131300
OEGB01000004
[OEGB] human metagenome; G_DNA_Posterior fornix
23530
23603
+
Lys
CTT
[ENA]
¢þ
>WENV181173588
OEJK01000001
[OEJK] human metagenome; G_DNA_Posterior fornix
8648
8574
-
Lys
CTT
[ENA]
¢þ
>WENV181173589
OEJK01000001
[OEJK] human metagenome; G_DNA_Posterior fornix
8451
8377
-
Lys
CTT
[ENA]
¢þ
>WENV181244348
OFFH01078237
[OFFH] mouse gut metagenome; faeces
3
78
+
Lys
CTT
[ENA]
¢þ
>WENV181259722
OFFW01001715
[OFFW] mouse gut metagenome; faeces
8532
8457
-
Lys
CTT
[ENA]
¢þ
>WENV181259723
OFFW01001715
[OFFW] mouse gut metagenome; faeces
8043
7968
-
Lys
CTT
[ENA]
¢þ
>WENV181433468
OGDE01007379
[OGDE] metagenome; Human gut stool
2038
2110
+
Lys
CTT
[ENA]
¢þ
>WENV181454378
OGED01000931
[OGED] metagenome; Human gut stool
5560
5635
+
Lys
CTT
[ENA]
¢þ
>WENV181454379
OGED01000931
[OGED] metagenome; Human gut stool
9200
9275
+
Lys
CTT
[ENA]
¢þ
>WENV181456979
OGEH01002851
[OGEH] metagenome; Human gut stool
2468
2393
-
Lys
CTT
[ENA]
¢þ
>WENV181457968
OGEJ01000099
[OGEJ] metagenome; Human gut stool
8983
9058
+
Lys
CTT
[ENA]
¢þ
>WENV181457969
OGEJ01000099
[OGEJ] metagenome; Human gut stool
12623
12698
+
Lys
CTT
[ENA]
¢þ
>WENV181539037
OGHZ01000626
[OGHZ] metagenome; Human gut stool
19017
19092
+
Lys
CTT
[ENA]
¢þ
>WENV181573626
OGJR01029292
[OGJR] metagenome; Human gut stool
204
279
+
Lys
CTT
[ENA]
¢þ
>WENV182194904
OHPC01046035
[OHPC] human gut metagenome; feces
128
54
-
Lys
CTT
[ENA]
¢þ
>WENV182276986
OHUQ01002605
[OHUQ] human gut metagenome; feces
1315
1240
-
Lys
CTT
[ENA]
¢þ
>W141229014
BAMI01000013
Bacillota
Ligilactobacillus equi JCM 10991 [BAMI]
2006
2080
+
Lys
CTT
[ENA]
¡û
>W141229015
BAMI01000013
Bacillota
Ligilactobacillus equi JCM 10991 [BAMI]
2126
2200
+
Lys
CTT
[ENA]
¡û
>W141229026
BAMI01000018
Bacillota
Ligilactobacillus equi JCM 10991 [BAMI]
155
79
-
Lys
CTT
[ENA]
¡û
>WENV182808030
OJWB01000054
[OJWB] human gut metagenome; human gut
22714
22788
+
Lys
CTT
[ENA]
¢þ
>WENV183560701
OOBU01000416
[OOBU] human gut metagenome; human gut
8956
9031
+
Lys
CTT
[ENA]
¢þ
>C181102780
CP024610
Bacillota
Lactobacillus terrae NIBRBAC000499792 [CP024610]
408224
408150
-
Lys
CTT
-
¡û
>C181181856
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1227633
1227707
+
Lys
CTT
-
¡û
>C181181857
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1229313
1229387
+
Lys
CTT
-
¡û
>C191078692
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
1253240
1253314
+
Lys
CTT
-
¡û
>C191078693
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
1253450
1253524
+
Lys
CTT
-
¡û
>C191206553
LR134322
Bacillota
Lacticaseibacillus rhamnosus NCTC13710 [LR134322]
2939957
2939883
-
Lys
CTT
-
¡û
>W1910622032
LKFR01000010
Bacillota
Lacticaseibacillus paracasei FAM18149 [LKFR]
737879
737805
-
Lys
CTT
[ENA]
¡û
>W1910622341
LKFX01000037
Bacillota
Lacticaseibacillus paracasei FAM19353 [LKFX]
21238
21164
-
Lys
CTT
[ENA]
¡û
>W1910622410
LKFY01000070
Bacillota
Lacticaseibacillus paracasei FAM19404 [LKFY]
2047
1973
-
Lys
CTT
[ENA]
¡û
>W1910622464
LKFZ01000063
Bacillota
Lacticaseibacillus paracasei FAM22276 [LKFZ]
6820
6746
-
Lys
CTT
[ENA]
¡û
>W1910622789
LKGF01000061
Bacillota
Lacticaseibacillus paracasei FAM3248 [LKGF]
6820
6746
-
Lys
CTT
[ENA]
¡û
>W1910623056
LKGK01000098
Bacillota
Lacticaseibacillus paracasei FAM6165 [LKGK]
4441
4367
-
Lys
CTT
[ENA]
¡û
>W1910902260
NGOS01000032
Bacillota
Lactobacillus taiwanensis 107v [NGOS]
226630
226704
+
Lys
CTT
[ENA]
¡û
>W1910902261
NGOS01000032
Bacillota
Lactobacillus taiwanensis 107v [NGOS]
226821
226895
+
Lys
CTT
[ENA]
¡û
>W1910918428
NIBB01000009
Bacillota
Lactobacillus johnsonii UMNLJ54 [NIBB]
21951
21877
-
Lys
CTT
[ENA]
¡û
>W1910918429
NIBB01000009
Bacillota
Lactobacillus johnsonii UMNLJ54 [NIBB]
21742
21668
-
Lys
CTT
[ENA]
¡û
>W1911570174
PCZH01000004
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
1916
1841
-
Lys
CTT
[ENA]
¡û
>W1911570220
PCZH01000052
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
156
231
+
Lys
CTT
[ENA]
¡û
>W1911706045
QOSE01000008
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
27789
27714
-
Lys
CTT
[ENA]
¡û
>W1810001307
BEXH01000002
Bacillota
Lactobacillus paragasseri JCM 5343 [BEXH]
53561
53487
-
Lys
CTT
[ENA]
¡û
>W1810001308
BEXH01000002
Bacillota
Lactobacillus paragasseri JCM 5343 [BEXH]
53364
53290
-
Lys
CTT
[ENA]
¡û
>W1810185902
PKGM01000022
Bacillota
Ligilactobacillus agilis 273 [PKGM]
305
379
+
Lys
CTT
[ENA]
¡û
>W1810190636
PKJZ01000038
Bacillota
Lactobacillus jensenii UMB0007 [PKJZ]
3746
3819
+
Lys
CTT
[ENA]
¡û
>W1810190637
PKJZ01000038
Bacillota
Lactobacillus jensenii UMB0007 [PKJZ]
7919
7992
+
Lys
CTT
[ENA]
¡û
>W1810472679
QAGZ01000015
Bacillota
Lacticaseibacillus rhamnosus DS15_11 [QAGZ]
12575
12501
-
Lys
CTT
[ENA]
¡û
>W1810474061
QAHW01000080
Bacillota
Lactobacillus sp. DS22_6 [QAHW]
305
379
+
Lys
CTT
[ENA]
¡û
>C151010767
CP006690
Bacillota
Lacticaseibacillus casei 12A [CP006690]
2873799
2873725
-
Lys
CTT
[Ensembl]
¡û
>C151092413
CP012187
Bacillota
Lacticaseibacillus paracasei CAUH35 [CP012187]
2736870
2736796
-
Lys
CTT
-
¡û
>W11107197
ACWR01000010
Bacillota
Lactobacillus iners 7_1_47FAA [ACWR]
24944
25018
+
Lys
CTT
[ENA]
¡û
>W1510650358
CVQY01000018
Bacillota
Ligilactobacillus agilis Marseille [CVQY]
150430
150356
-
Lys
CTT
[ENA]
¡û
>W1511435247
JUIM01001273
Bacillota
Lacticaseibacillus rhamnosus Lr044 [JUIM]
3147
3221
+
Lys
CTT
[ENA]
¡û
>W1511445891
JUWG01000041
Bacillota
Lacticaseibacillus rhamnosus 708_LRHA [JUWG]
23729
23803
+
Lys
CTT
[ENA]
¡û
>W1511462337
JVNI01000055
Bacillota
Lacticaseibacillus paracasei 275_LPAR [JVNI]
26388
26462
+
Lys
CTT
[ENA]
¡û
>W1511468302
JVUB01000116
Bacillota
Lacticaseibacillus paracasei 1316.rep1_LPAR [JVUB]
9917
9843
-
Lys
CTT
[ENA]
¡û
>C121004197
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
44038
44112
+
Lys
CTT
[Ensembl]
¡û
>C121004198
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
44217
44293
+
Lys
CTT
[Ensembl]
¡û
>C121005643
CP003094
Bacillota
Lacticaseibacillus rhamnosus ATCC 8530 [CP003094]
2909411
2909337
-
Lys
CTT
[Ensembl]
¡û
>W1610035783
AZET01000012
Bacillota
Lactobacillus iners DSM 13335 [AZET]
4091
4017
-
Lys
CTT
[ENA]
¡û
>W1610057811
BBZC01000026
Bacillota
Pediococcus pentosaceus [BBZC]
9049
9125
+
Lys
CTT
[ENA]
¡û
>W1610072827
BCVJ01000024
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
391
315
-
Lys
CTT
[ENA]
¡û
>W1610072837
BCVJ01000046
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
17301
17225
-
Lys
CTT
[ENA]
¡û
>W1610543945
JTIE01000013
Bacillota
Lacticaseibacillus rhamnosus [JTIE]
33941
33867
-
Lys
CTT
[ENA]
¡û
>W1610544097
JTIH01000001
Bacillota
Lacticaseibacillus rhamnosus [JTIH]
317908
317982
+
Lys
CTT
[ENA]
¡û
>W1610544177
JTII01000026
Bacillota
Lacticaseibacillus rhamnosus [JTII]
23556
23630
+
Lys
CTT
[ENA]
¡û
>W1610544710
JTIT01000019
Bacillota
Lacticaseibacillus rhamnosus [JTIT]
32035
31961
-
Lys
CTT
[ENA]
¡û
>W1710032822
AZET01000012
Bacillota
Lactobacillus iners DSM 13335 [AZET]
4091
4017
-
Lys
CTT
[ENA]
¡û
>W1710054510
BBZC01000026
Bacillota
Pediococcus pentosaceus [BBZC]
9049
9125
+
Lys
CTT
[ENA]
¡û
>W1710069945
BCVJ01000024
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
391
315
-
Lys
CTT
[ENA]
¡û
>W1710069955
BCVJ01000046
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
17301
17225
-
Lys
CTT
[ENA]
¡û
>W1710647076
JTIE01000013
Bacillota
Lacticaseibacillus rhamnosus [JTIE]
33941
33867
-
Lys
CTT
[ENA]
¡û
>W1710647228
JTIH01000001
Bacillota
Lacticaseibacillus rhamnosus [JTIH]
317908
317982
+
Lys
CTT
[ENA]
¡û
>W1710647308
JTII01000026
Bacillota
Lacticaseibacillus rhamnosus [JTII]
23556
23630
+
Lys
CTT
[ENA]
¡û
>W1710647841
JTIT01000019
Bacillota
Lacticaseibacillus rhamnosus [JTIT]
32035
31961
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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