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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.327699 (13 seq.)
>WENV180097217
MTBK01175276
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
424
349
-
Val
TAC
[ENA]
¢þ
>WENV170660277
JXWT01052136
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
180
105
-
Val
TAC
[ENA]
¢þ
>WENV170683915
LFRM01009795
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1738
1813
+
Val
TAC
[ENA]
¢þ
>C191138256
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
2528740
2528667
-
Val
TAC
-
¡û
>C191138260
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
2528353
2528280
-
Val
TAC
-
¡û
>W1910211730
FMIF01000036
Bacillota
Sporanaerobacter sp. PP17-6a [FMIF]
1213
1286
+
Val
TAC
[ENA]
¡û
>W1910496839
FXVB02000062
Bacillota
Bacillota bacterium HV4-6-A5C [FXVB]
1735
1662
-
Val
TAC
[ENA]
¡û
>C161076040
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
2816611
2816536
-
Val
TAC
[Ensembl]
¡û
>C161076088
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
2907561
2907486
-
Val
TAC
[Ensembl]
¡û
>W1610043696
BAZZ01000001
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
202997
203072
+
Val
TAC
[ENA]
¡û
>C131011056
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
2749354
2749279
-
Val
TAC
-
¡û
>C131011922
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
2753614
2753539
-
Val
TAC
-
¡û
>W1710040856
BAZZ01000001
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
202997
203072
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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