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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328243 (56 seq.)
>W1710934455
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
318726
318651
-
Arg
CCG
[ENA]
¡û
>W1710934492
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
230474
230399
-
Arg
CCG
[ENA]
¡û
>W1711136000
LUZR01000122
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
4111
4186
+
Arg
CCG
[ENA]
¡û
>W1711272416
LZFI01000001
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
71215
71140
-
Arg
CCG
[ENA]
¡û
>W1711301910
MAIK01000340
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
860
785
-
Arg
CCG
[ENA]
¡û
>W1711625797
MPIY01000017
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
194672
194597
-
Arg
CCG
[ENA]
¡û
>W1711932794
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
394073
393998
-
Arg
CCG
[ENA]
¡û
>W1712077062
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
620097
620022
-
Arg
CCG
[ENA]
¡û
>C171103236
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
650176
650251
+
Arg
CCG
-
¡û
>WENV180111411
OAPN01075547
[OAPN] marine metagenome; 2011
271
196
-
Arg
CCG
[ENA]
¢þ
>WENV180266873
OBEQ011796019
[OBEQ] groundwater metagenome; groundwater
228
303
+
Arg
CCG
[ENA]
¢þ
>WENV181227391
OFDN01009216
[OFDN] hot springs metagenome; Water
2162
2087
-
Arg
CCG
[ENA]
¢þ
>WENV181231357
OFEK01021709
[OFEK] activated sludge metagenome; Anaerobic digester
1444
1519
+
Arg
CCG
[ENA]
¢þ
>WENV181367528
OFQB01007162
[OFQB] freshwater metagenome; Freshwater Lake
203
128
-
Arg
CCG
[ENA]
¢þ
>WENV181368159
OFQK01000536
[OFQK] freshwater metagenome; Freshwater Lake
84
159
+
Arg
CCG
[ENA]
¢þ
>WENV181368301
OFQL01000295
[OFQL] freshwater metagenome; Freshwater Lake
1821
1746
-
Arg
CCG
[ENA]
¢þ
>WENV181368808
OFQN01000783
[OFQN] freshwater metagenome; Freshwater Lake
3896
3971
+
Arg
CCG
[ENA]
¢þ
>WENV181369318
OFQP01000260
[OFQP] freshwater metagenome; Freshwater Lake
4233
4158
-
Arg
CCG
[ENA]
¢þ
>WENV181369797
OFQR01000152
[OFQR] freshwater metagenome; Freshwater Lake
542
617
+
Arg
CCG
[ENA]
¢þ
>WENV181370139
OFQS01000077
[OFQS] freshwater metagenome; Freshwater Lake
4447
4522
+
Arg
CCG
[ENA]
¢þ
>WENV181370571
OFQT01000332
[OFQT] freshwater metagenome; Freshwater Lake
1966
2041
+
Arg
CCG
[ENA]
¢þ
>WENV181395670
OFSB01000236
[OFSB] freshwater metagenome; Freshwater Lake
194
269
+
Arg
CCG
[ENA]
¢þ
>WENV181855853
OGWM01003467
[OGWM] freshwater metagenome; freshwater
42
117
+
Arg
CCG
[ENA]
¢þ
>W141212863
AZRA01000155
Betaproteobacteria
Sphaerotilus natans subsp. natans DSM 6575 [AZRA]
7917
7992
+
Arg
CCG
[ENA]
¡û
>WENV170961517
MLJW01000104
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
84285
84210
-
Arg
CCG
[ENA]
¢þ
>WENV170961783
MLJW01001260
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
5069
4994
-
Arg
CCG
[ENA]
¢þ
>C181187706
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
28586
28511
-
Arg
CCG
-
¡û
>C181195899
CP031124
Betaproteobacteria
Ephemeroptericola cinctiostellae F02 [CP031124]
900993
901068
+
Arg
CCG
-
¡û
>C181219073
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
674266
674191
-
Arg
CCG
-
¡û
>W1910207445
FLMQ01000055
Betaproteobacteria
Thiomonas delicata DSM 16361 [FLMQ]
845599
845674
+
Arg
CCG
[ENA]
¡û
>W1910211076
FMBP01000004
Betaproteobacteria
Thiomonas sp. X19 [FMBP]
677268
677343
+
Arg
CCG
[ENA]
¡û
>W1911279046
NTGB01000001
Betaproteobacteria
Polynucleobacter rarus MT-CBb6A5 [NTGB]
2594382
2594457
+
Arg
CCG
[ENA]
¡û
>WENV027198
AACY021026437
Marine microbial communities from Global Ocean Sampling (GOS)
680
755
+
Arg
CCG
[ENA]
>W1810273267
PSNX01000005
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
39181
39106
-
Arg
CCG
[ENA]
¡û
>W1810273296
PSNY01000003
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [PSNY]
164757
164832
+
Arg
CCG
[ENA]
¡û
>W1810658986
QJJS01000006
Betaproteobacteria
Sphaerotilus hippei DSM 566 [QJJS]
65787
65862
+
Arg
CCG
[ENA]
¡û
>W1810699163
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
403210
403135
-
Arg
CCG
[ENA]
¡û
>W1810699180
QMCH01000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
265247
265172
-
Arg
CCG
[ENA]
¡û
>W1810762755
QQAP01000005
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
123767
123692
-
Arg
CCG
[ENA]
¡û
>C151081683
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
6265041
6265116
+
Arg
CCG
[Ensembl]
¡û
>W10105799
ACXV01000018
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
52651
52726
+
Arg
CCG
[ENA]
¡û
>C10113363
CP002021
Betaproteobacteria
Thiomonas intermedia [CP002021]
486441
486366
-
Arg
CCG
[Ensembl]
¡û
>W11108119
ACXV01000018
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
52651
52726
+
Arg
CCG
[ENA]
¡û
>W1510741271
CYHF01000002
Betaproteobacteria
Thiomonas bhubaneswarensis DSM 18181 [CYHF]
362087
362012
-
Arg
CCG
[ENA]
¡û
>W1511552108
JZUE01000008
Betaproteobacteria
Aquincola tertiaricarbonis MIMtkpLc11 [JZUE]
232400
232325
-
Arg
CCG
[ENA]
¡û
>WENV058958
AACY023348675
Marine microbial communities from Global Ocean Sampling (GOS)
1227
1302
+
Arg
CCG
[ENA]
>W1610085574
CTRM01000052
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
86579
86654
+
Arg
CCG
[ENA]
¡û
>W1610632412
LIPV01000002
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
362087
362012
-
Arg
CCG
[ENA]
¡û
>W1610791986
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
318726
318651
-
Arg
CCG
[ENA]
¡û
>W1610792023
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
230474
230399
-
Arg
CCG
[ENA]
¡û
>W1610947120
LUZR01000122
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
4111
4186
+
Arg
CCG
[ENA]
¡û
>W1611052750
MAIK01000340
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
860
785
-
Arg
CCG
[ENA]
¡û
>W1710090163
CTRM01000052
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
86579
86654
+
Arg
CCG
[ENA]
¡û
>W1710597123
FTMZ01000005
Betaproteobacteria
Sphaerotilus natans [FTMZ]
201620
201545
-
Arg
CCG
[ENA]
¡û
>W1710605901
FWXJ01000015
Betaproteobacteria
Polynucleobacter kasalickyi VK13 [FWXJ]
60537
60462
-
Arg
CCG
[ENA]
¡û
>W1710766798
LIPV01000002
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
362087
362012
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK