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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328316 (22 seq.)
>W1710791219
LJNM01000221
Gemmatimonadota
Gemmatimonas sp. SG8_17 [LJNM]
4456
4381
-
Glu
CTC
[ENA]
¡û
>W1711573289
MNCV01000072
Gemmatimonadota
Gemmatimonadetes bacterium 13_2_20CM_69_8 [MNCV]
1407
1480
+
Glu
CTC
[ENA]
¡û
>W1711573311
MNCW01000087
Gemmatimonadota
Gemmatimonadetes bacterium 13_2_20CM_69_27 [MNCW]
6219
6147
-
Glu
CTC
[ENA]
¡û
>W1711573661
MNDP01000389
Gemmatimonadota
Gemmatimonadetes bacterium 13_2_20CM_2_69_23 [MNDP]
21411
21483
+
Glu
CTC
[ENA]
¡û
>W1711573678
MNDQ01000079
Gemmatimonadota
Gemmatimonadetes bacterium 13_2_20CM_2_66_5 [MNDQ]
4619
4546
-
Glu
CTC
[ENA]
¡û
>W1711573711
MNDR01000095
Gemmatimonadota
Gemmatimonadetes bacterium 13_2_20CM_2_65_7 [MNDR]
70869
70797
-
Glu
CTC
[ENA]
¡û
>W1711574011
MNEL01000010
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_40CM_69_22 [MNEL]
6218
6290
+
Glu
CTC
[ENA]
¡û
>W1711574040
MNEM01000196
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_40CM_66_11 [MNEM]
17980
18053
+
Glu
CTC
[ENA]
¡û
>W1711574391
MNFG01000223
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_40CM_4_69_8 [MNFG]
6152
6224
+
Glu
CTC
[ENA]
¡û
>W1711574423
MNFI01000039
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_40CM_4_65_7 [MNFI]
9553
9481
-
Glu
CTC
[ENA]
¡û
>W1711574772
MNGF01000098
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_40CM_3_66_12 [MNGF]
1299
1372
+
Glu
CTC
[ENA]
¡û
>W1711574790
MNGG01000013
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_40CM_3_65_8 [MNGG]
20231
20159
-
Glu
CTC
[ENA]
¡û
>W1711575484
MNIR01000010
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_20CM_4_69_16 [MNIR]
9446
9519
+
Glu
CTC
[ENA]
¡û
>W1711575511
MNIS01000005
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_20CM_4_66_11 [MNIS]
22308
22235
-
Glu
CTC
[ENA]
¡û
>WENV180295887
OBIZ01413264
[OBIZ] soil metagenome; soil
108
36
-
Glu
CTC
[ENA]
¡û
>WENV180691758
OCZS010203979
[OCZS] soil metagenome; soil
338
266
-
Glu
CTC
[ENA]
¡û
>WENV181144583
OEHO01043164
[OEHO] metagenome; unknown
91
163
+
Glu
CTC
[ENA]
¡û
>WENV181185146
OELD01000796
[OELD] metagenome; 1998
4935
5007
+
Glu
CTC
[ENA]
¡û
>WENV181185687
OELW01002244
[OELW] metagenome; 1998
910
837
-
Glu
CTC
[ENA]
¡û
>WENV181192620
OEPS010847569
[OEPS] soil metagenome; soil
138
211
+
Glu
CTC
[ENA]
¡û
>WENV170993139
MWWB01196174
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
159
233
+
Glu
CTC
[ENA]
¡û
>W1610655144
LJNM01000221
Gemmatimonadota
Gemmatimonas sp. SG8_17 [LJNM]
4456
4381
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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