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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328422 (37 seq.)
>W1711128523
LUSM01000083
Bacillota
Lactiplantibacillus plantarum [LUSM]
285
211
-
Asn
GTT
[ENA]
¡û
>W1711133088
LUWO01000004
Bacillota
Lactiplantibacillus plantarum [LUWO]
170020
169946
-
Asn
GTT
[ENA]
¡û
>W1711134622
LUXN01000032
Bacillota
Lactiplantibacillus plantarum [LUXN]
311501
311427
-
Asn
GTT
[ENA]
¡û
>W1711305440
MAMT01000008
Bacillota
Lactiplantibacillus plantarum [MAMT]
54401
54475
+
Asn
GTT
[ENA]
¡û
>W1711346072
MCOL01000001
Bacillota
Lactiplantibacillus plantarum [MCOL]
645304
645379
+
Asn
GTT
[ENA]
¡û
>W1711485417
MKDV01000075
Bacillota
Lactiplantibacillus plantarum [MKDV]
422
496
+
Asn
GTT
[ENA]
¡û
>W1711485646
MKEB01000110
Bacillota
Lactiplantibacillus plantarum [MKEB]
797
871
+
Asn
GTT
[ENA]
¡û
>W1711485761
MKED01000058
Bacillota
Lactiplantibacillus plantarum [MKED]
36147
36073
-
Asn
GTT
[ENA]
¡û
>C171026328
CP013749
Bacillota
Lactiplantibacillus plantarum KP [CP013749]
1825655
1825729
+
Asn
GTT
-
¡û
>WENV183217130
OLQI01000033
[OLQI] human gut metagenome; faeces
95865
95791
-
Asn
GTT
[ENA]
¢þ
>WENV170659370
JXWR01004466
[JXWR] soil metagenome; rice field; ambient CO2
781
707
-
Asn
GTT
[ENA]
¢þ
>C181076799
CP023174
Bacillota
Lactiplantibacillus plantarum BDGP2 [CP023174]
199545
199619
+
Asn
GTT
-
¡û
>C181076802
CP023174
Bacillota
Lactiplantibacillus plantarum BDGP2 [CP023174]
258568
258642
+
Asn
GTT
-
¡û
>W1910177706
BJDY01000005
Bacillota
Lactiplantibacillus mudanjiangensis 11050 [BJDY]
1451
1377
-
Asn
GTT
[ENA]
¡û
>W1910211135
FMBQ01000020
Bacillota
Lactiplantibacillus plantarum [FMBQ]
178065
177991
-
Asn
GTT
[ENA]
¡û
>W1910752136
MKDX01000048
Bacillota
Lactiplantibacillus plantarum RI-265 [MKDX]
4793
4867
+
Asn
GTT
[ENA]
¡û
>W1910797742
MSUE01000031
Bacillota
Lactiplantibacillus plantarum M4-1 [MSUE]
32033
32107
+
Asn
GTT
[ENA]
¡û
>W1910798148
MSUL01000336
Bacillota
Lactiplantibacillus plantarum Y2-4 [MSUL]
8983
8909
-
Asn
GTT
[ENA]
¡û
>W1910798499
MSUS01000031
Bacillota
Lactiplantibacillus plantarum A3-2 [MSUS]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910799055
MSVD01000029
Bacillota
Lactiplantibacillus plantarum B1-1 [MSVD]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910799621
MSVO01000034
Bacillota
Lactiplantibacillus plantarum B6-2 [MSVO]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910799865
MSVT01000029
Bacillota
Lactiplantibacillus plantarum H31.1.1 [MSVT]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910800357
MSWC01000049
Bacillota
Lactiplantibacillus plantarum R2.2.2 [MSWC]
1975
2049
+
Asn
GTT
[ENA]
¡û
>W1910800388
MSWD01000045
Bacillota
Lactiplantibacillus plantarum R2.3.1 [MSWD]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910800563
MSWG01000094
Bacillota
Lactiplantibacillus plantarum R3.1.2 [MSWG]
1640
1714
+
Asn
GTT
[ENA]
¡û
>W1910800950
MSWO01000039
Bacillota
Lactiplantibacillus plantarum R4.3.1 [MSWO]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910801321
MSWV01000069
Bacillota
Lactiplantibacillus plantarum R5.3.2 [MSWV]
25832
25758
-
Asn
GTT
[ENA]
¡û
>W1910801660
MSXC01000046
Bacillota
Lactiplantibacillus plantarum R7.1.1 [MSXC]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910801988
MSXI01000065
Bacillota
Lactiplantibacillus plantarum R14.2.1 [MSXI]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910802124
MSXL01000026
Bacillota
Lactiplantibacillus plantarum R14.3.2 [MSXL]
25832
25758
-
Asn
GTT
[ENA]
¡û
>W1810762556
QPQS01000020
Bacillota
Lactiplantibacillus plantarum CGMCC12436 [QPQS]
30610
30536
-
Asn
GTT
[ENA]
¡û
>C161092447
CP015966
Bacillota
Lactiplantibacillus plantarum LZ206 [CP015966]
342946
343020
+
Asn
GTT
-
¡û
>C131012649
CP004082
Bacillota
Lactiplantibacillus plantarum ZJ316 [CP004082]
2431468
2431394
-
Asn
GTT
[Ensembl]
¡û
>W1610940016
LUSM01000083
Bacillota
Lactiplantibacillus plantarum [LUSM]
285
211
-
Asn
GTT
[ENA]
¡û
>W1610944161
LUWO01000004
Bacillota
Lactiplantibacillus plantarum [LUWO]
170020
169946
-
Asn
GTT
[ENA]
¡û
>W1610945695
LUXN01000032
Bacillota
Lactiplantibacillus plantarum [LUXN]
311501
311427
-
Asn
GTT
[ENA]
¡û
>W1710716687
LEBT01000005
Bacillota
Lactiplantibacillus plantarum [LEBT]
98516
98590
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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