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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328422 (18 seq.)
>W1711578753
MNQZ01000001
Bacteroidota
Prevotella sp. AG:487_50_53 [MNQZ]
11619
11544
-
Gly
CCC
[ENA]
¡û
>WENV181512288
OGGT01000508
[OGGT] metagenome; Human gut stool
2900
2827
-
Gly
CCC
[ENA]
¡û
>WENV181586491
OGKG01001812
[OGKG] metagenome; Human gut stool
12663
12738
+
Gly
CCC
[ENA]
¡û
>WENV181940485
OGYX01089601
[OGYX] human gut metagenome; faeces
471
544
+
Gly
CCC
[ENA]
¡û
>WENV181984427
OHAI01012194
[OHAI] human gut metagenome; faeces
3303
3376
+
Gly
CCC
[ENA]
¡û
>WENV182702005
OJOQ01000465
[OJOQ] human gut metagenome; stool sample
1661
1586
-
Gly
CCC
[ENA]
¡û
>WENV182732235
OJQB01000118
[OJQB] human gut metagenome; stool sample
115
40
-
Gly
CCC
[ENA]
¡û
>WENV182757289
OJRH01001240
[OJRH] human gut metagenome; stool sample
298
223
-
Gly
CCC
[ENA]
¡û
>WENV182922419
OKUC01053799
[OKUC] human gut metagenome; feces
90
165
+
Gly
CCC
[ENA]
¡û
>WENV183153588
OLOR01000209
[OLOR] human gut metagenome; faeces
66680
66755
+
Gly
CCC
[ENA]
¡û
>WENV183171624
OLPC01000544
[OLPC] human gut metagenome; faeces
11476
11403
-
Gly
CCC
[ENA]
¡û
>WENV183234515
OLQV01050065
[OLQV] human gut metagenome; faeces
865
790
-
Gly
CCC
[ENA]
¡û
>WENV183258772
OLRO01000005
[OLRO] human gut metagenome; faeces
12178
12103
-
Gly
CCC
[ENA]
¡û
>WENV183298681
OLSN01000598
[OLSN] human gut metagenome; faeces
11628
11553
-
Gly
CCC
[ENA]
¡û
>WENV183573801
OOCH01000851
[OOCH] human gut metagenome; human gut
1700
1627
-
Gly
CCC
[ENA]
¡û
>WENV183639811
OQVI01075975
[OQVI] human gut metagenome; human gut
441
366
-
Gly
CCC
[ENA]
¡û
>W1610460888
FKKG01000006
Bacteroidota
Leyella lascolaii KHD1 [FKKG]
280457
280532
+
Gly
CCC
[ENA]
¡û
>W1710460452
FKKG01000006
Bacteroidota
Leyella lascolaii KHD1 [FKKG]
280457
280532
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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