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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328473 (84 seq.)
>W1710863719
LMFJ01000001
Actinomycetota
Aeromicrobium sp. Root495 [LMFJ]
42355
42430
+
Thr
CGT
[ENA]
¡û
>W1710874053
LMNH01000002
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
298066
298141
+
Thr
CGT
[ENA]
¡û
>W1710874697
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
1179137
1179064
-
Thr
CGT
[ENA]
¡û
>W1710874846
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
295022
295097
+
Thr
CGT
[ENA]
¡û
>W1710877439
LMQC01000012
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
508565
508490
-
Thr
CGT
[ENA]
¡û
>W1710878742
LMRF01000001
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
15026
15101
+
Thr
CGT
[ENA]
¡û
>W131226613
AUEM01000007
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
169184
169109
-
Thr
CGT
[ENA]
¡û
>W1711724845
MTQN01000012
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
1812571
1812646
+
Thr
CGT
[ENA]
¡û
>W1712084118
NHQT01000002
Actinomycetota
Nocardioides sp. XL1 [NHQT]
83738
83813
+
Thr
CGT
[ENA]
¡û
>W131226752
AUEP01000015
Actinomycetota
Marmoricola sp. URHB0036 [AUEP]
83794
83869
+
Thr
CGT
[ENA]
¡û
>W131229447
AUGU01000016
Actinomycetota
Nocardioides insulae DSM 17944 [AUGU]
112166
112241
+
Thr
CGT
[ENA]
¡û
>WENV180000054
CZKA01000078
[CZKA] metagenome; liquid mineral medium
12616
12541
-
Thr
CGT
[ENA]
¢þ
>WENV180271340
OBEQ012261916
[OBEQ] groundwater metagenome; groundwater
1943
1868
-
Thr
CGT
[ENA]
¢þ
>WENV181385403
OFRI01081236
[OFRI] wastewater metagenome; Exp Tend VB 90WW
566
492
-
Thr
CGT
[ENA]
¢þ
>W141241363
CAHG01000008
Actinomycetota
Aeromicrobium massiliense JC14 [CAHG]
70357
70432
+
Thr
CGT
[ENA]
¡û
>WENV170574886
FLYN01014866
[FLYN] hot springs metagenome; Sediment
209
134
-
Thr
CGT
[ENA]
¢þ
>WENV170954718
MJUI01032117
[MJUI] soil metagenome; viral particles from soil sample MG3
37
112
+
Thr
CGT
[ENA]
¢þ
>W09103270
AAJB01000026
Actinomycetota
Nocardioides sp. JS614 [AAJB]
32408
32483
+
Thr
CGT
[ENA]
¡û
>W09109048
ABTU01000015
Actinomycetota
Geodermatophilus obscurus DSM 43160 [ABTU]
152835
152760
-
Thr
CGT
[ENA]
¡û
>W09109244
ABUC01000001
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
1205626
1205551
-
Thr
CGT
[ENA]
¡û
>W09127765
ACLF01000538
Actinomycetota
Aeromicrobium marinum DSM 15272 [ACLF]
2288
2363
+
Thr
CGT
[ENA]
¡û
>C191056528
CP028137
Actinomycetota
Rathayibacter festucae DSM 15932 [CP028137]
2436252
2436178
-
Thr
CGT
-
¡û
>W141558039
JHVP01000008
Actinomycetota
Geodermatophilaceae bacterium URHA0031 [JHVP]
6176
6103
-
Thr
CGT
[ENA]
¡û
>W141730412
JNII01000006
Actinomycetota
Geodermatophilaceae bacterium URHB0048 [JNII]
224169
224244
+
Thr
CGT
[ENA]
¡û
>W141730518
JNIK01000011
Actinomycetota
Blastococcus sp. URHD0036 [JNIK]
279319
279246
-
Thr
CGT
[ENA]
¡û
>W141775187
JOJN01000002
Actinomycetota
Nocardioides aequoreus [JOJN]
508295
508222
-
Thr
CGT
[ENA]
¡û
>W1910211964
FMIR01000008
Actinomycetota
Microbacterium oxydans [FMIR]
48535
48609
+
Thr
CGT
[ENA]
¡û
>W1910547150
FZNO01000005
Actinomycetota
Blastococcus mobilis DSM 44272 [FZNO]
146254
146327
+
Thr
CGT
[ENA]
¡û
>W1910548130
FZOH01000007
Actinomycetota
Geodermatophilus saharensis DSM 45423 [FZOH]
247275
247202
-
Thr
CGT
[ENA]
¡û
>W1911385143
NVPT01000033
Actinomycetota
Geodermatophilus chilensis B12 [NVPT]
15174
15099
-
Thr
CGT
[ENA]
¡û
>W1911492093
OBDO01000005
Actinomycetota
Geodermatophilus sabuli DSM 46844 [OBDO]
188469
188542
+
Thr
CGT
[ENA]
¡û
>W1911495732
OBQI01000001
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
779752
779679
-
Thr
CGT
[ENA]
¡û
>W1911497445
OCNK01000003
Actinomycetota
Blastococcus haudaquaticus DSM 44270 [OCNK]
410434
410508
+
Thr
CGT
[ENA]
¡û
>W1911566717
PCPA01000016
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
27397
27471
+
Thr
CGT
[ENA]
¡û
>W1911566862
PCPD01000020
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
46953
46879
-
Thr
CGT
[ENA]
¡û
>W1911567127
PCPI01000024
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
12593
12667
+
Thr
CGT
[ENA]
¡û
>W1911567172
PCPJ01000023
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
46953
46879
-
Thr
CGT
[ENA]
¡û
>W1911567262
PCPL01000019
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
12601
12675
+
Thr
CGT
[ENA]
¡û
>W1911693690
QLVF01000096
Actinomycetota
Aeromicrobium lacus CPCC 204604 [QLVF]
683
757
+
Thr
CGT
[ENA]
¡û
>W1810222218
POQU01000080
Actinomycetota
Blastococcus atacamensis P6 [POQU]
8421
8494
+
Thr
CGT
[ENA]
¡û
>W1810533120
QCZF01000001
Actinomycetota
Blastococcus litoris GP-S2-8 [QCZF]
375841
375915
+
Thr
CGT
[ENA]
¡û
>W1810592401
QFXK01000039
Actinomycetota
Kribbella monticola NEAU-SW521 [QFXK]
309308
309233
-
Thr
CGT
[ENA]
¡û
>W1810676864
QKMH01000016
Actinomycetota
Geodermatophilus sp. DSM 44511 [QKMH]
104437
104364
-
Thr
CGT
[ENA]
¡û
>W1810679019
QKNV01000106
Actinomycetota
Modestobacter versicolor CP153-2 [QKNV]
8866
8939
+
Thr
CGT
[ENA]
¡û
>W1810733405
QOHF01000040
Actinomycetota
Geodermatophilus sp. TF02-6 [QOHF]
2187
2260
+
Thr
CGT
[ENA]
¡û
>W1810733437
QOHG01000013
Actinomycetota
Blastococcus sp. TF02A-26 [QOHG]
48406
48333
-
Thr
CGT
[ENA]
¡û
>W1810733476
QOHH01000005
Actinomycetota
Blastococcus sp. TF02-9 [QOHH]
35446
35519
+
Thr
CGT
[ENA]
¡û
>W1810733507
QOHI01000001
Actinomycetota
Blastococcus sp. TBT05-19 [QOHI]
324729
324802
+
Thr
CGT
[ENA]
¡û
>W1810733595
QOHJ01000010
Actinomycetota
Blastococcus sp. TF02A-30 [QOHJ]
91630
91557
-
Thr
CGT
[ENA]
¡û
>W1810733623
QOHK01000004
Actinomycetota
Blastococcus sp. TF02-8 [QOHK]
81242
81169
-
Thr
CGT
[ENA]
¡û
>W1810914998
QVQH01000004
Actinomycetota
Geodermatophilus sp. LHW52908 [QVQH]
51243
51170
-
Thr
CGT
[ENA]
¡û
>SRA1014714
SRR023845.276697
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
123
48
-
Thr
CGT
[SRA]
>W1510060514
CCXJ01000344
Actinomycetota
Nocardioides massiliensis GD13 [CCXJ]
968
1043
+
Thr
CGT
[ENA]
¡û
>C10107962
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
7085141
7085066
-
Thr
CGT
[Ensembl]
¡û
>W1511307078
JPMX01000014
Actinomycetota
Modestobacter caceresii KNN45-2b [JPMX]
57622
57697
+
Thr
CGT
[ENA]
¡û
>W11187423
CAEF01000896
Actinomycetota
Aeromicrobium massiliense JC14 [CAEF]
20080
20005
-
Thr
CGT
[ENA]
¡û
>C121016093
FO117623
Actinomycetota
Blastococcus saxobsidens DD2 [FO117623]
552606
552679
+
Thr
CGT
[Ensembl]
¡û
>C121016191
FO203431
Actinomycetota
Modestobacter marinus BC501 [FO203431]
697932
698005
+
Thr
CGT
[Ensembl]
¡û
>C161063211
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
3351724
3351649
-
Thr
CGT
[Ensembl]
¡û
>C161082864
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
1663276
1663351
+
Thr
CGT
[Ensembl]
¡û
>W1610726065
LMFJ01000001
Actinomycetota
Aeromicrobium sp. Root495 [LMFJ]
42355
42430
+
Thr
CGT
[ENA]
¡û
>W1610736399
LMNH01000002
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
298066
298141
+
Thr
CGT
[ENA]
¡û
>W1610737043
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
1179137
1179064
-
Thr
CGT
[ENA]
¡û
>W1610737192
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
295022
295097
+
Thr
CGT
[ENA]
¡û
>W1610739785
LMQC01000012
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
508565
508490
-
Thr
CGT
[ENA]
¡û
>W1610741088
LMRF01000001
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
15026
15101
+
Thr
CGT
[ENA]
¡û
>W1710506063
FMUH01000001
Actinomycetota
Klenkia marina DSM 45722 [FMUH]
568357
568282
-
Thr
CGT
[ENA]
¡û
>W1710514345
FNAW01000004
Actinomycetota
Blastococcus fimeti DSM 44205 [FNAW]
308042
307969
-
Thr
CGT
[ENA]
¡û
>W1710515378
FNBT01000005
Actinomycetota
Blastococcus aurantiacus DSM 44268 [FNBT]
57923
57850
-
Thr
CGT
[ENA]
¡û
>W1710515945
FNCF01000001
Actinomycetota
Klenkia brasiliensis [FNCF]
401296
401223
-
Thr
CGT
[ENA]
¡û
>W1710522439
FNHE01000006
Actinomycetota
Geodermatophilus siccatus [FNHE]
117738
117663
-
Thr
CGT
[ENA]
¡û
>W1710524384
FNIR01000008
Actinomycetota
Klenkia soli [FNIR]
214955
215028
+
Thr
CGT
[ENA]
¡û
>W1710530454
FNOT01000004
Actinomycetota
Geodermatophilus africanus [FNOT]
323565
323490
-
Thr
CGT
[ENA]
¡û
>W1710544057
FOAO01000002
Actinomycetota
Blastococcus sp. DSM 46786 [FOAO]
186893
186966
+
Thr
CGT
[ENA]
¡û
>W1710548999
FOEE01000021
Actinomycetota
Trujillella endophytica endophyticus [FOEE]
54155
54228
+
Thr
CGT
[ENA]
¡û
>W1710554084
FOIE01000005
Actinomycetota
Geodermatophilus poikilotrophus [FOIE]
240247
240172
-
Thr
CGT
[ENA]
¡û
>W1710558763
FOMD01000002
Actinomycetota
Klenkia taihuensis [FOMD]
415223
415150
-
Thr
CGT
[ENA]
¡û
>W1710567593
FOSW01000004
Actinomycetota
Geodermatophilus ruber [FOSW]
211638
211565
-
Thr
CGT
[ENA]
¡û
>W1710571759
FOWE01000003
Actinomycetota
Geodermatophilus obscurus [FOWE]
412722
412797
+
Thr
CGT
[ENA]
¡û
>W1710572373
FOWQ01000003
Actinomycetota
Geodermatophilus dictyosporus DSM 44208 [FOWQ]
380089
380162
+
Thr
CGT
[ENA]
¡û
>W1710575413
FOZD01000002
Actinomycetota
Agromyces sp. CF514 [FOZD]
646283
646358
+
Thr
CGT
[ENA]
¡û
>W1710577716
FPBA01000001
Actinomycetota
Geodermatophilus amargosae [FPBA]
442812
442885
+
Thr
CGT
[ENA]
¡û
>W1710584865
FQVX01000001
Actinomycetota
Geodermatophilus nigrescens [FQVX]
424320
424395
+
Thr
CGT
[ENA]
¡û
>W1710593501
FRDM01000064
Actinomycetota
Geodermatophilus obscurus [FRDM]
11823
11748
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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