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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328866 (46 seq.)
>W1710865179
LMGL01000003
Actinomycetota
Microbacterium sp. Root166 [LMGL]
224145
224072
-
Lys
TTT
[ENA]
¡û
>W1710874723
LMNV01000005
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
470799
470724
-
Lys
TTT
[ENA]
¡û
>W1710909114
LNQG01000009
Actinomycetota
Microbacterium enclense [LNQG]
18149
18224
+
Lys
TTT
[ENA]
¡û
>W1711318584
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
1283048
1283123
+
Lys
TTT
[ENA]
¡û
>W1711385503
MEEH01000018
Actinomycetota
Microbacterium sp. SCN 71-17 [MEEH]
7848
7773
-
Lys
TTT
[ENA]
¡û
>W1711385572
MEEI01000045
Actinomycetota
Microbacterium sp. SCN 70-18 [MEEI]
28310
28385
+
Lys
TTT
[ENA]
¡û
>W1711385643
MEEK01000026
Actinomycetota
Microbacterium sp. SCN 70-27 [MEEK]
23982
23907
-
Lys
TTT
[ENA]
¡û
>W131161925
AQYD01000007
Actinomycetota
Microbacterium sp. 292MF [AQYD]
394270
394343
+
Lys
TTT
[ENA]
¡û
>W131185017
ARTJ01000003
Actinomycetota
Microbacterium sp. 11MF [ARTJ]
898235
898160
-
Lys
TTT
[ENA]
¡û
>C171073408
CP018134
Actinomycetota
Microbacterium paludicola CC3 [CP018134]
108545
108470
-
Lys
TTT
-
¡û
>WENV180018940
FTBD01000070
[FTBD] metagenome; soil
3135
3062
-
Lys
TTT
[ENA]
¢þ
>WENV180029257
FTJI01289740
[FTJI] metagenome; soil
277
203
-
Lys
TTT
[ENA]
¢þ
>WENV180034775
FTKR01286440
[FTKR] metagenome; soil
277
203
-
Lys
TTT
[ENA]
¢þ
>W141223203
BADA01000546
Actinomycetota
Microbacterium sp. B19 [BADA]
725
800
+
Lys
TTT
[ENA]
¡û
>W141230041
BASQ01000002
Actinomycetota
Microbacterium sp. TS-1 [BASQ]
186897
186972
+
Lys
TTT
[ENA]
¡û
>WENV170252810
CEQU01030927
[CEQU] marine metagenome genome assembly TARA_076_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
62203
62128
-
Lys
TTT
[ENA]
¢þ
>C191011731
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
419250
419177
-
Lys
TTT
-
¡û
>C191056079
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
2358947
2359020
+
Lys
TTT
-
¡û
>C191074826
CP031421
Actinomycetota
Microbacterium oleivorans A9 [CP031421]
877153
877079
-
Lys
TTT
-
¡û
>W141565041
JIBF01000009
Actinomycetota
Microbacterium sp. UNC423CL45Tsu [JIBF]
181336
181263
-
Lys
TTT
[ENA]
¡û
>W1910181895
BJML01000002
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
262406
262481
+
Lys
TTT
[ENA]
¡û
>W1910225164
FMSE01000005
Actinomycetota
Microbacteriaceae bacterium Alg239_V181 [FMSE]
87038
86963
-
Lys
TTT
[ENA]
¡û
>W1911159644
NPMR01000001
Actinomycetota
Microbacterium sp. Yaish 1 [NPMR]
182289
182363
+
Lys
TTT
[ENA]
¡û
>W1810234108
PPEE01000001
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
463516
463441
-
Lys
TTT
[ENA]
¡û
>W1810262654
PQSV01000002
Actinomycetota
Microbacterium sp. Ru50 [PQSV]
253306
253231
-
Lys
TTT
[ENA]
¡û
>W1810722554
QNUW01000016
Actinomycetota
Microbacterium arborescens RCB1 [QNUW]
197484
197559
+
Lys
TTT
[ENA]
¡û
>W1510010508
BBLU01000014
Actinomycetota
Demequina mangrovi NBRC 105856 [BBLU]
104574
104501
-
Lys
TTT
[ENA]
¡û
>W1510010563
BBLV01000023
Actinomycetota
Demequina gelatinilytica NBRC 109390 [BBLV]
16218
16291
+
Lys
TTT
[ENA]
¡û
>W1510010596
BBLW01000006
Actinomycetota
Demequina phytophila NBRC 109391 [BBLW]
183020
183093
+
Lys
TTT
[ENA]
¡û
>W1510010649
BBLX01000014
Actinomycetota
Demequina maris NBRC 109392 [BBLX]
27656
27581
-
Lys
TTT
[ENA]
¡û
>W1510010743
BBLZ01000008
Actinomycetota
Demequina soli NBRC 109394 [BBLZ]
62910
62985
+
Lys
TTT
[ENA]
¡û
>W1510010787
BBMA01000006
Actinomycetota
Demequina silvatica NBRC 109395 [BBMA]
234628
234701
+
Lys
TTT
[ENA]
¡û
>W1510010817
BBMB01000009
Actinomycetota
Demequina subtropica NBRC 109396 [BBMB]
39695
39622
-
Lys
TTT
[ENA]
¡û
>W1510010846
BBMC01000002
Actinomycetota
Demequina rhizosphaerae NBRC 109397 [BBMC]
748068
748143
+
Lys
TTT
[ENA]
¡û
>W1510010927
BBMD01000005
Actinomycetota
Demequina maris NBRC 109398 [BBMD]
194934
195009
+
Lys
TTT
[ENA]
¡û
>W1510010983
BBMF01000004
Actinomycetota
Demequina maris NBRC 110048 [BBMF]
978128
978203
+
Lys
TTT
[ENA]
¡û
>W1511584651
LAVO01000007
Actinomycetota
Microbacterium chocolatum SIT 101 [LAVO]
109333
109258
-
Lys
TTT
[ENA]
¡û
>C161073150
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
1369612
1369539
-
Lys
TTT
[Ensembl]
¡û
>W1610074021
BCWI01000027
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
26433
26358
-
Lys
TTT
[ENA]
¡û
>W1610727525
LMGL01000003
Actinomycetota
Microbacterium sp. Root166 [LMGL]
224145
224072
-
Lys
TTT
[ENA]
¡û
>W1610737069
LMNV01000005
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
470799
470724
-
Lys
TTT
[ENA]
¡û
>W1610767473
LNQG01000009
Actinomycetota
Microbacterium enclense [LNQG]
18149
18224
+
Lys
TTT
[ENA]
¡û
>W1611061927
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
1283048
1283123
+
Lys
TTT
[ENA]
¡û
>W1710071139
BCWI01000027
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
26433
26358
-
Lys
TTT
[ENA]
¡û
>W1710575731
FOZJ01000003
Actinomycetota
Microbacterium sp. cf046 [FOZJ]
1048371
1048296
-
Lys
TTT
[ENA]
¡û
>W1710599985
FTPO01000001
Actinomycetota
Microbacterium sp. RU33B [FTPO]
576161
576086
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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