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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.329025 (35 seq.)
>W1711021240
LQZA01000005
Betaproteobacteria
Ferrovum sp. PN-J185 [LQZA]
62852
62777
-
Lys
TTT
[ENA]
¡û
>W131180663
ARNH01000001
Betaproteobacteria
Bordetella sp. FB-8 [ARNH]
697943
697868
-
Lys
TTT
[ENA]
¡û
>C171049745
CP016448
Betaproteobacteria
Methyloversatilis sp. RAC08 [CP016448]
2217732
2217657
-
Lys
TTT
-
¡û
>C171115888
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
4414678
4414603
-
Lys
TTT
-
¡û
>W131163092
AQZM01000008
Betaproteobacteria
Methyloversatilis universalis EHg5 [AQZM]
88998
88923
-
Lys
TTT
[ENA]
¡û
>W131166920
ARCV01000005
Betaproteobacteria
Methyloversatilis thermotolerans NVD [ARCV]
722831
722906
+
Lys
TTT
[ENA]
¡û
>W131170304
ARFL01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
908555
908630
+
Lys
TTT
[ENA]
¡û
>W131186101
ARVV01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ18-153 [ARVV]
4114233
4114158
-
Lys
TTT
[ENA]
¡û
>W131186652
ARWH01000001
Betaproteobacteria
Methyloversatilis universalis Fam500 [ARWH]
3058096
3058021
-
Lys
TTT
[ENA]
¡û
>WENV180038439
FZPV01000052
[FZPV] metagenome; underground water
12811
12736
-
Lys
TTT
[ENA]
¢þ
>WENV181311107
OFJB01000027
[OFJB] sludge metagenome; sludge
1368
1293
-
Lys
TTT
[ENA]
¢þ
>WENV181367457
OFQB01002045
[OFQB] freshwater metagenome; Freshwater Lake
766
691
-
Lys
TTT
[ENA]
¢þ
>WENV181368795
OFQN01000647
[OFQN] freshwater metagenome; Freshwater Lake
4089
4014
-
Lys
TTT
[ENA]
¢þ
>WENV181835495
OGVI01001668
[OGVI] freshwater metagenome; freshwater
276
201
-
Lys
TTT
[ENA]
¢þ
>W141216081
AZUP01000001
Betaproteobacteria
Methyloversatilis discipulorum FAM1 [AZUP]
3241866
3241941
+
Lys
TTT
[ENA]
¡û
>C181227096
LT907988
Betaproteobacteria
Orrella dioscoreae [LT907988]
1062177
1062252
+
Lys
TTT
-
¡û
>C191022924
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
568725
568650
-
Lys
TTT
-
¡û
>C191182070
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
2784817
2784742
-
Lys
TTT
-
¡û
>W1910646077
LWKV01000003
Betaproteobacteria
Achromobacter sp. HZ01 [LWKV]
50616
50691
+
Lys
TTT
[ENA]
¡û
>W1910699728
MERU01000009
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
350483
350558
+
Lys
TTT
[ENA]
¡û
>W1911636067
PVTV01000003
Betaproteobacteria
Jezberella montanilacus MWH-P2sevCIIIb [PVTV]
40881
40956
+
Lys
TTT
[ENA]
¡û
>W1810222120
POQS01000008
Betaproteobacteria
Achromobacter pulmonis ANB-1 [POQS]
55874
55949
+
Lys
TTT
[ENA]
¡û
>W1810756498
QPGB01000002
Betaproteobacteria
Parvibium lacunae KMB9 [QPGB]
505333
505258
-
Lys
TTT
[ENA]
¡û
>WENV035288
AACY021684010
Marine microbial communities from Global Ocean Sampling (GOS)
357
432
+
Lys
TTT
[ENA]
>W11162835
AFHG01000057
Betaproteobacteria
Methyloversatilis universalis FAM5 [AFHG]
197540
197615
+
Lys
TTT
[ENA]
¡û
>W1610447581
FKBS01000007
Betaproteobacteria
Bordetella ansorpii [FKBS]
51438
51513
+
Lys
TTT
[ENA]
¡û
>W1610459333
FKIF01000001
Betaproteobacteria
Bordetella ansorpii [FKIF]
826476
826401
-
Lys
TTT
[ENA]
¡û
>W1610506777
FLRC01000002
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
51900
51975
+
Lys
TTT
[ENA]
¡û
>W1610604910
LFRI01000415
Betaproteobacteria
Aquabacterium parvum [LFRI]
17067
16992
-
Lys
TTT
[ENA]
¡û
>W1610869528
LQZA01000005
Betaproteobacteria
Ferrovum sp. PN-J185 [LQZA]
62852
62777
-
Lys
TTT
[ENA]
¡û
>W1710447209
FKBS01000007
Betaproteobacteria
Bordetella ansorpii [FKBS]
51438
51513
+
Lys
TTT
[ENA]
¡û
>W1710458961
FKIF01000001
Betaproteobacteria
Bordetella ansorpii [FKIF]
826476
826401
-
Lys
TTT
[ENA]
¡û
>W1710498998
FLRC01000002
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
51900
51975
+
Lys
TTT
[ENA]
¡û
>W1710610191
FYEX01000001
Betaproteobacteria
Polynucleobacter victoriensis MWH-VicM1 [FYEX]
510442
510517
+
Lys
TTT
[ENA]
¡û
>W1710726353
LFRI01000415
Betaproteobacteria
Aquabacterium parvum [LFRI]
17067
16992
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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