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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.329227 (143 seq.)
>W1710922285
LOAS01000080
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
1799
1724
-
Ala
TGC
[ENA]
¡û
>W1711709183
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
970802
970877
+
Ala
TGC
[ENA]
¡û
>WENV016140
AACY020456672
Marine microbial communities from Global Ocean Sampling (GOS)
618
541
-
Ala
TGC
[ENA]
>WENV016325
AACY020461040
Marine microbial communities from Global Ocean Sampling (GOS)
798
875
+
Ala
TGC
[ENA]
>WENV016353
AACY020461836
Marine microbial communities from Global Ocean Sampling (GOS)
2590
2513
-
Ala
TGC
[ENA]
>w012721
AAMS01000001
Alphaproteobacteria
Yoonia vestfoldensis SKA53 [AAMS]
321813
321736
-
Ala
TGC
[ENA]
¡û
>WENV180100912
OAOT01009867
[OAOT] marine metagenome; Mesotrophic water
71
146
+
Ala
TGC
[ENA]
¢þ
>WENV180103681
OAPB01000170
[OAPB] marine metagenome; Sterile flask
961
1036
+
Ala
TGC
[ENA]
¢þ
>WENV180103692
OAPB01000248
[OAPB] marine metagenome; Sterile flask
431
506
+
Ala
TGC
[ENA]
¢þ
>WENV180104262
OAPC01000294
[OAPC] marine metagenome; na
1968
2043
+
Ala
TGC
[ENA]
¢þ
>WENV180104443
OAPC01008720
[OAPC] marine metagenome; na
5
80
+
Ala
TGC
[ENA]
¢þ
>WENV180109771
OAPL01000014
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
2261
2336
+
Ala
TGC
[ENA]
¢þ
>WENV180109919
OAPL01010183
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
395
320
-
Ala
TGC
[ENA]
¢þ
>WENV180110089
OAPL01099590
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
68
143
+
Ala
TGC
[ENA]
¢þ
>WENV180113084
OAPQ01001380
[OAPQ] marine metagenome; ENVO: 00002149
1780
1705
-
Ala
TGC
[ENA]
¢þ
>WENV180366973
OBOE01001442
[OBOE] marine metagenome; ENVO:00002010
1545
1470
-
Ala
TGC
[ENA]
¢þ
>WENV180383095
OBOU01000642
[OBOU] marine metagenome; ENV:00002010
2219
2294
+
Ala
TGC
[ENA]
¢þ
>WENV180384209
OBOX01000011
[OBOX] marine metagenome; Sterile flask
2279
2354
+
Ala
TGC
[ENA]
¢þ
>WENV180388943
OBPI01007458
[OBPI] marine metagenome; Sterile flask
807
882
+
Ala
TGC
[ENA]
¢þ
>WENV180396761
OBPW01000158
[OBPW] marine metagenome; seawater
960
1035
+
Ala
TGC
[ENA]
¢þ
>WENV180399269
OBQH01000093
[OBQH] marine metagenome; ENV:00002010
391
466
+
Ala
TGC
[ENA]
¢þ
>W141043763
AMGO01000012
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
87356
87431
+
Ala
TGC
[ENA]
¡û
>WENV180585252
OCOK01062242
[OCOK] marine metagenome; ENVO:00002010
77
152
+
Ala
TGC
[ENA]
¢þ
>WENV180589762
OCOS01013241
[OCOS] marine metagenome; Sterile flask
61
136
+
Ala
TGC
[ENA]
¢þ
>WENV180590269
OCOS01206189
[OCOS] marine metagenome; Sterile flask
5
80
+
Ala
TGC
[ENA]
¢þ
>WENV180590617
OCOT01100540
[OCOT] marine metagenome; ENVO:00002010
77
2
-
Ala
TGC
[ENA]
¢þ
>WENV180636482
OCRF01009686
[OCRF] marine metagenome; niskin bottle
795
720
-
Ala
TGC
[ENA]
¢þ
>WENV180638504
OCRI01000602
[OCRI] marine metagenome; Sterile flask
5811
5736
-
Ala
TGC
[ENA]
¢þ
>W08011232
ABSK01000023
Alphaproteobacteria
Octadecabacter arcticus 238 [ABSK]
117806
117734
-
Ala
TGC
[ENA]
¡û
>W08011237
ABSK01000033
Alphaproteobacteria
Octadecabacter arcticus 238 [ABSK]
175112
175187
+
Ala
TGC
[ENA]
¡û
>WENV181309448
OFIW01000097
[OFIW] marine metagenome; seawater
3179
3104
-
Ala
TGC
[ENA]
¢þ
>WENV181321677
OFKN01000710
[OFKN] marine metagenome; seawater
284
209
-
Ala
TGC
[ENA]
¢þ
>WENV181323535
OFKY01004289
[OFKY] marine metagenome; sea ice
26
101
+
Ala
TGC
[ENA]
¢þ
>WENV181324702
OFLH01000080
[OFLH] marine metagenome; sea ice
1491
1566
+
Ala
TGC
[ENA]
¢þ
>WENV181390801
OFRQ01000081
[OFRQ] seawater metagenome; seawater
3242
3317
+
Ala
TGC
[ENA]
¢þ
>WENV181392576
OFRX01000043
[OFRX] seawater metagenome; seawater
2798
2873
+
Ala
TGC
[ENA]
¢þ
>WENV181392622
OFRX01000508
[OFRX] seawater metagenome; seawater
792
867
+
Ala
TGC
[ENA]
¢þ
>W141199846
AYXI01000121
Alphaproteobacteria
Defluviimonas sp. 20V17 [AYXI]
1871
1946
+
Ala
TGC
[ENA]
¡û
>WENV182545312
OJBN01000905
[OJBN] seawater metagenome; Sea water
2985
2910
-
Ala
TGC
[ENA]
¢þ
>WENV182545451
OJBN01003277
[OJBN] seawater metagenome; Sea water
2564
2489
-
Ala
TGC
[ENA]
¢þ
>WENV182554044
OJCT01000047
[OJCT] seawater metagenome; Sea water
3755
3830
+
Ala
TGC
[ENA]
¢þ
>WENV182558336
OJDM01000112
[OJDM] seawater metagenome; Sea water
4106
4181
+
Ala
TGC
[ENA]
¢þ
>WENV182561669
OJDX01000603
[OJDX] seawater metagenome; Sea water
285
360
+
Ala
TGC
[ENA]
¢þ
>WENV182563535
OJEC01002088
[OJEC] seawater metagenome; Sea water
2576
2501
-
Ala
TGC
[ENA]
¢þ
>WENV182564085
OJEE01000068
[OJEE] seawater metagenome; Sea water
285
360
+
Ala
TGC
[ENA]
¢þ
>WENV182565655
OJEH01022336
[OJEH] seawater metagenome; Sea water
1035
960
-
Ala
TGC
[ENA]
¢þ
>WENV182565886
OJEI01000764
[OJEI] seawater metagenome; Sea water
4070
4145
+
Ala
TGC
[ENA]
¢þ
>WENV182566483
OJEL01001356
[OJEL] seawater metagenome; Sea water
1401
1476
+
Ala
TGC
[ENA]
¢þ
>WENV182570339
OJFC01002500
[OJFC] seawater metagenome; Sea water
319
394
+
Ala
TGC
[ENA]
¢þ
>WENV182570768
OJFF01000326
[OJFF] seawater metagenome; Sea water
1210
1135
-
Ala
TGC
[ENA]
¢þ
>WENV182573816
OJFQ01000067
[OJFQ] seawater metagenome; Sea water
3123
3048
-
Ala
TGC
[ENA]
¢þ
>WENV182578030
OJGM01000628
[OJGM] seawater metagenome; Sea water
2149
2224
+
Ala
TGC
[ENA]
¢þ
>WENV182582968
OJHC01005190
[OJHC] seawater metagenome; Sea water
293
368
+
Ala
TGC
[ENA]
¢þ
>WENV182588351
OJHS01000789
[OJHS] seawater metagenome; Sea water
189
264
+
Ala
TGC
[ENA]
¢þ
>WENV182590146
OJIH01001031
[OJIH] seawater metagenome; Sea water
2463
2538
+
Ala
TGC
[ENA]
¢þ
>WENV183054299
OLGT01000224
[OLGT] seawater metagenome; Sea water
283
358
+
Ala
TGC
[ENA]
¢þ
>WENV183054636
OLGU01000597
[OLGU] seawater metagenome; Sea water
5455
5530
+
Ala
TGC
[ENA]
¢þ
>WENV183057758
OLHM01003360
[OLHM] seawater metagenome; Sea water
298
373
+
Ala
TGC
[ENA]
¢þ
>WENV183058169
OLHN01011761
[OLHN] seawater metagenome; Sea water
302
377
+
Ala
TGC
[ENA]
¢þ
>WENV183616865
OOEE01004835
[OOEE] marine metagenome; sea ice
829
754
-
Ala
TGC
[ENA]
¢þ
>WENV183621416
OOFU01000578
[OOFU] marine metagenome; sea ice
4201
4126
-
Ala
TGC
[ENA]
¢þ
>WENV183621601
OOFU01013607
[OOFU] marine metagenome; sea ice
744
669
-
Ala
TGC
[ENA]
¢þ
>WENV183621704
OOFU01034726
[OOFU] marine metagenome; sea ice
11
86
+
Ala
TGC
[ENA]
¢þ
>WENV183622671
OOFW01001165
[OOFW] marine metagenome; sea ice
2792
2717
-
Ala
TGC
[ENA]
¢þ
>WENV183623285
OOFX01055976
[OOFX] marine metagenome; sea ice
284
359
+
Ala
TGC
[ENA]
¢þ
>WENV183624309
OOGD01000744
[OOGD] marine metagenome; sea ice
3037
2962
-
Ala
TGC
[ENA]
¢þ
>WENV183624770
OOGE01007780
[OOGE] marine metagenome; sea ice
461
536
+
Ala
TGC
[ENA]
¢þ
>WENV183626350
OOGI01000217
[OOGI] marine metagenome; seawater
2527
2452
-
Ala
TGC
[ENA]
¢þ
>WENV183628519
OOGO01000507
[OOGO] marine metagenome; sea ice
3011
3086
+
Ala
TGC
[ENA]
¢þ
>WENV183628629
OOGO01003624
[OOGO] marine metagenome; sea ice
1328
1253
-
Ala
TGC
[ENA]
¢þ
>WENV183631281
OOGU01068666
[OOGU] marine metagenome; sea ice
568
493
-
Ala
TGC
[ENA]
¢þ
>WENV183631283
OOGU01068666
[OOGU] marine metagenome; sea ice
228
153
-
Ala
TGC
[ENA]
¢þ
>ENV08000045
ABLU01078590
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
100
25
-
Ala
TGC
[ENA]
¡û
>ENV08000094
ABLU01285092
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
4
79
+
Ala
TGC
[ENA]
¡û
>WENV183715570
PDWI01248103
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
476
551
+
Ala
TGC
[ENA]
¢þ
>WENV183716300
PDWI01300063
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1062
987
-
Ala
TGC
[ENA]
¢þ
>WENV170229474
CEQG01123872
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1161
1236
+
Ala
TGC
[ENA]
¢þ
>WENV170598482
FUWD010036935
[FUWD] metagenome; unknown
412
487
+
Ala
TGC
[ENA]
¢þ
>WENV170599927
FUWD010098539
[FUWD] metagenome; unknown
587
662
+
Ala
TGC
[ENA]
¢þ
>WENV170606101
FUWD010609173
[FUWD] metagenome; unknown
156
81
-
Ala
TGC
[ENA]
¢þ
>WENV170624750
FUWD013186093
[FUWD] metagenome; unknown
873
948
+
Ala
TGC
[ENA]
¢þ
>WENV170624752
FUWD013186094
[FUWD] metagenome; unknown
87
162
+
Ala
TGC
[ENA]
¢þ
>WENV170625563
FUWD013200548
[FUWD] metagenome; unknown
1167
1242
+
Ala
TGC
[ENA]
¢þ
>WENV170633029
FUWD013390236
[FUWD] metagenome; unknown
873
948
+
Ala
TGC
[ENA]
¢þ
>WENV170633031
FUWD013390237
[FUWD] metagenome; unknown
87
162
+
Ala
TGC
[ENA]
¢þ
>WENV170633790
FUWD013402821
[FUWD] metagenome; unknown
1167
1242
+
Ala
TGC
[ENA]
¢þ
>WENV170682203
LFFM01007211
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2242
2317
+
Ala
TGC
[ENA]
¢þ
>WENV170695916
LGVE01186517
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
207
282
+
Ala
TGC
[ENA]
¢þ
>WENV170779452
LZQO01000271
[LZQO] oil field metagenome; sample BH-FW-10 from oil reservoir
2105
2030
-
Ala
TGC
[ENA]
¢þ
>WENV170950028
MEHZ011471573
[MEHZ] marine metagenome; marine surface water
1058
983
-
Ala
TGC
[ENA]
¢þ
>WENV170950650
MEHZ011507660
[MEHZ] marine metagenome; marine surface water
1138
1063
-
Ala
TGC
[ENA]
¢þ
>WENV170950905
MEHZ011525726
[MEHZ] marine metagenome; marine surface water
314
389
+
Ala
TGC
[ENA]
¢þ
>WENV170952257
MEHZ011590636
[MEHZ] marine metagenome; marine surface water
10
85
+
Ala
TGC
[ENA]
¢þ
>WENV170952454
MEHZ011598407
[MEHZ] marine metagenome; marine surface water
479
404
-
Ala
TGC
[ENA]
¢þ
>WENV170952998
MEHZ011624492
[MEHZ] marine metagenome; marine surface water
329
404
+
Ala
TGC
[ENA]
¢þ
>WENV170953684
MEHZ011659141
[MEHZ] marine metagenome; marine surface water
430
505
+
Ala
TGC
[ENA]
¢þ
>WENV171002337
NHNJ01001484
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
85
160
+
Ala
TGC
[ENA]
¢þ
>WENV171002491
NHNJ01057108
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
409
334
-
Ala
TGC
[ENA]
¢þ
>C191152283
CP036532
Alphaproteobacteria
Roseitalea porphyridii MA7-20 [CP036532]
3185392
3185317
-
Ala
TGC
-
¡û
>C191184408
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
3987539
3987464
-
Ala
TGC
-
¡û
>WENV002236
AACY020062757
Marine microbial communities from Global Ocean Sampling (GOS)
1136
1059
-
Ala
TGC
[ENA]
>W09132738
ACOA01000003
Alphaproteobacteria
Thalassobium sp. R2A62 R2A62 [ACOA]
858169
858094
-
Ala
TGC
[ENA]
¡û
>W09132749
ACOA01000004
Alphaproteobacteria
Thalassobium sp. R2A62 R2A62 [ACOA]
118348
118273
-
Ala
TGC
[ENA]
¡û
>W1910443179
FWFV01000023
Alphaproteobacteria
Palleronia marisminoris CECT 7066 [FWFV]
2158
2233
+
Ala
TGC
[ENA]
¡û
>W1910499062
FXXQ01000007
Alphaproteobacteria
Boseongicola aestuarii CECT 8489 [FXXQ]
93965
93890
-
Ala
TGC
[ENA]
¡û
>W1910545563
FZLS01000019
Alphaproteobacteria
Rhodobacteraceae bacterium Water-Bin34 [FZLS]
4900
4825
-
Ala
TGC
[ENA]
¡û
>W1910549028
FZOY01000024
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
2255
2330
+
Ala
TGC
[ENA]
¡û
>W1910549369
FZPF01000008
Alphaproteobacteria
Jannaschia aquimarina DSM 28248 [FZPF]
12646
12571
-
Ala
TGC
[ENA]
¡û
>W1910693585
MDGM01000007
Alphaproteobacteria
Amylibacter kogurei 4G11 [MDGM]
428934
428859
-
Ala
TGC
[ENA]
¡û
>W1910808421
MUAV01000055
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
2199
2274
+
Ala
TGC
[ENA]
¡û
>W1911495134
OBMP01000021
Alphaproteobacteria
Rhodobacter sp. JA431 [OBMP]
1976
2051
+
Ala
TGC
[ENA]
¡û
>W1911747149
QWDA01000003
Alphaproteobacteria
Paracoccaceae bacterium IMCC 34051 [QWDA]
130241
130316
+
Ala
TGC
[ENA]
¡û
>W1810364933
PVTP01000024
Alphaproteobacteria
Yoonia maritima DSM 101533 [PVTP]
3730
3655
-
Ala
TGC
[ENA]
¡û
>W1810365098
PVTT01000002
Alphaproteobacteria
Hasllibacter halocynthiae DSM 29318 [PVTT]
1034721
1034796
+
Ala
TGC
[ENA]
¡û
>W1810464057
QAAA01000038
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [QAAA]
2143
2218
+
Ala
TGC
[ENA]
¡û
>W1810471810
QAGK01000026
Alphaproteobacteria
Oceaniglobus ichthyenteri YLY08 [QAGK]
3890
3815
-
Ala
TGC
[ENA]
¡û
>W1810486283
QAXT01000022
Alphaproteobacteria
Rhodobacter aestuarii JA296 [QAXT]
1971
2046
+
Ala
TGC
[ENA]
¡û
>W1810504244
QBKS01000002
Alphaproteobacteria
Litoreibacter ponti DSM 100977 [QBKS]
1004817
1004742
-
Ala
TGC
[ENA]
¡û
>W1810514054
QBUD01000036
Alphaproteobacteria
Yoonia sediminilitoris DSM 29955 [QBUD]
2086
2161
+
Ala
TGC
[ENA]
¡û
>W1810596827
QGGV01000001
Alphaproteobacteria
Silicimonas algicola DSM 103371 [QGGV]
177661
177736
+
Ala
TGC
[ENA]
¡û
>W1810722652
QNVJ01000072
Alphaproteobacteria
Alkalilacustris brevis 34079 [QNVJ]
3756
3681
-
Ala
TGC
[ENA]
¡û
>W1810722996
QNVX01000055
Alphaproteobacteria
Rhodovulum sp. BSW8 [QNVX]
2157
2232
+
Ala
TGC
[ENA]
¡û
>W1810759673
QPJP01000036
Alphaproteobacteria
Yoonia sediminilitoris CECT 8284 [QPJP]
2086
2161
+
Ala
TGC
[ENA]
¡û
>C151092047
CP012160
Alphaproteobacteria
Octadecabacter temperatus SB1 [CP012160]
2909092
2909017
-
Ala
TGC
-
¡û
>W1510650142
CVQV01000062
Alphaproteobacteria
Nereida ignava CECT 5292 [CVQV]
4042
3967
-
Ala
TGC
[ENA]
¡û
>WENV041295
AACY022146793
Marine microbial communities from Global Ocean Sampling (GOS)
493
416
-
Ala
TGC
[ENA]
>WENV044065
AACY022386069
Marine microbial communities from Global Ocean Sampling (GOS)
710
785
+
Ala
TGC
[ENA]
>W1511524564
JYFE01000050
Alphaproteobacteria
Jannaschia aquimarina GSW-M26 [JYFE]
102919
102994
+
Ala
TGC
[ENA]
¡û
>WENV046610
AACY022611427
Marine microbial communities from Global Ocean Sampling (GOS)
198
275
+
Ala
TGC
[ENA]
>W1610091948
CXPG01000014
Alphaproteobacteria
Jannaschia rubra [CXPG]
7911
7836
-
Ala
TGC
[ENA]
¡û
>W1610092481
CYPR01000094
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
15993
15918
-
Ala
TGC
[ENA]
¡û
>C131005916
CP003740
Alphaproteobacteria
Octadecabacter antarcticus 307 [CP003740]
25685
25760
+
Ala
TGC
[Ensembl]
¡û
>C131005920
CP003740
Alphaproteobacteria
Octadecabacter antarcticus 307 [CP003740]
361570
361645
+
Ala
TGC
[Ensembl]
¡û
>W1610628548
LIGP01000013
Alphaproteobacteria
Loktanella sp. 1ANDIMAR09 [LIGP]
2060
2135
+
Ala
TGC
[ENA]
¡û
>W1610641269
LJAK01000027
Alphaproteobacteria
Loktanella sp. 3ANDIMAR09 [LJAK]
3880
3805
-
Ala
TGC
[ENA]
¡û
>W1610779764
LOAS01000080
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
1799
1724
-
Ala
TGC
[ENA]
¡û
>W1710095305
CXPG01000014
Alphaproteobacteria
Jannaschia rubra [CXPG]
7911
7836
-
Ala
TGC
[ENA]
¡û
>W1710095736
CYPR01000094
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
15993
15918
-
Ala
TGC
[ENA]
¡û
>W1710543075
FNZQ01000001
Alphaproteobacteria
Jannaschia helgolandensis [FNZQ]
210616
210541
-
Ala
TGC
[ENA]
¡û
>W1710555050
FOIZ01000002
Alphaproteobacteria
Cognatiyoonia koreensis [FOIZ]
302929
302854
-
Ala
TGC
[ENA]
¡û
>W1710562102
FOOS01000001
Alphaproteobacteria
Jannaschia rubra [FOOS]
359311
359236
-
Ala
TGC
[ENA]
¡û
>W1710565171
FORA01000006
Alphaproteobacteria
Jannaschia pohangensis [FORA]
120485
120560
+
Ala
TGC
[ENA]
¡û
>W1710566472
FORZ01000025
Alphaproteobacteria
Nereida ignava DSM 16309 [FORZ]
10309
10384
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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