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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.329919 (252 seq.)
>W1710821488
LKTL01000017
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
110067
109992
-
Phe
GAA
[ENA]
¡û
>W1710821525
LKTL01000113
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
84
159
+
Phe
GAA
[ENA]
¡û
>W1711174327
LWED01000029
Gammaproteobacteria
Shewanella baltica [LWED]
8104
8179
+
Phe
GAA
[ENA]
¡û
>W1711174349
LWED01000060
Gammaproteobacteria
Shewanella baltica [LWED]
192098
192023
-
Phe
GAA
[ENA]
¡û
>W1711174351
LWED01000060
Gammaproteobacteria
Shewanella baltica [LWED]
191225
191150
-
Phe
GAA
[ENA]
¡û
>W1711273460
LZFV01000013
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
260555
260480
-
Phe
GAA
[ENA]
¡û
>W1711273462
LZFV01000013
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
259990
259915
-
Phe
GAA
[ENA]
¡û
>W1711273470
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
529392
529317
-
Phe
GAA
[ENA]
¡û
>W1711340573
MCBT01000022
Gammaproteobacteria
Shewanella colwelliana [MCBT]
62578
62503
-
Phe
GAA
[ENA]
¡û
>W1711340593
MCBT01000046
Gammaproteobacteria
Shewanella colwelliana [MCBT]
380476
380401
-
Phe
GAA
[ENA]
¡û
>W1711621624
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
956020
955945
-
Phe
GAA
[ENA]
¡û
>W1711621626
MPDG02000003
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
7752
7827
+
Phe
GAA
[ENA]
¡û
>W1711621642
MPDG02000016
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
188
113
-
Phe
GAA
[ENA]
¡û
>W1711621654
MPDG02000044
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
202
127
-
Phe
GAA
[ENA]
¡û
>W1711624433
MPHJ01000001
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
354947
354872
-
Phe
GAA
[ENA]
¡û
>W1711624435
MPHJ01000001
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
354022
353947
-
Phe
GAA
[ENA]
¡û
>W1711624478
MPHJ01000011
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
8717
8792
+
Phe
GAA
[ENA]
¡û
>W1711624591
MPHK01000011
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
138710
138635
-
Phe
GAA
[ENA]
¡û
>W1711624605
MPHK01000020
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
746
671
-
Phe
GAA
[ENA]
¡û
>W1711624607
MPHK01000020
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
491
416
-
Phe
GAA
[ENA]
¡û
>C171033366
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
2694647
2694722
+
Phe
GAA
-
¡û
>C171033368
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
2695420
2695495
+
Phe
GAA
-
¡û
>C171033375
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4990584
4990659
+
Phe
GAA
-
¡û
>WENV013236
AACY020363767
Marine microbial communities from Global Ocean Sampling (GOS)
114
37
-
Phe
GAA
[ENA]
>WENV013238
AACY020363767
Marine microbial communities from Global Ocean Sampling (GOS)
736
659
-
Phe
GAA
[ENA]
>WENV013304
AACY020366177
Marine microbial communities from Global Ocean Sampling (GOS)
1953
2030
+
Phe
GAA
[ENA]
>WENV013306
AACY020366177
Marine microbial communities from Global Ocean Sampling (GOS)
2579
2656
+
Phe
GAA
[ENA]
>C020971
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
3232507
3232582
+
Phe
GAA
[Ensembl]
¡û
>C020974
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
3421796
3421871
+
Phe
GAA
[Ensembl]
¡û
>C021995
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3459744
3459819
+
Phe
GAA
[Ensembl]
¡û
>C022025
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
777587
777512
-
Phe
GAA
[Ensembl]
¡û
>C022262
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
3812755
3812830
+
Phe
GAA
[Ensembl]
¡û
>C022297
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1386648
1386573
-
Phe
GAA
[Ensembl]
¡û
>C022299
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1386012
1385937
-
Phe
GAA
[Ensembl]
¡û
>C022364
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
3582813
3582888
+
Phe
GAA
[Ensembl]
¡û
>C022398
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1381444
1381369
-
Phe
GAA
[Ensembl]
¡û
>C022400
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1380829
1380754
-
Phe
GAA
[Ensembl]
¡û
>C022561
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
3598840
3598915
+
Phe
GAA
[Ensembl]
¡û
>C022602
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1492197
1492122
-
Phe
GAA
[Ensembl]
¡û
>C022604
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1491515
1491440
-
Phe
GAA
[Ensembl]
¡û
>C022696
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
3497824
3497899
+
Phe
GAA
[Ensembl]
¡û
>C022737
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
1296167
1296092
-
Phe
GAA
[Ensembl]
¡û
>w028521
ABDD01000009
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
8579
8656
+
Phe
GAA
[ENA]
¡û
>w024885
AAZC01000015
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
64855
64778
-
Phe
GAA
[ENA]
¡û
>w024883
AAZC01000015
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
65414
65337
-
Phe
GAA
[ENA]
¡û
>w022916
AAWY01000063
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
10976
10904
-
Phe
GAA
[ENA]
¡û
>w022866
AAWY01000015
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
36900
36823
-
Phe
GAA
[ENA]
¡û
>w021121
AAVJ01000045
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
1006
1083
+
Phe
GAA
[ENA]
¡û
>w021119
AAVJ01000045
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
263
340
+
Phe
GAA
[ENA]
¡û
>w021078
AAVJ01000013
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
113651
113574
-
Phe
GAA
[ENA]
¡û
>w020011
AAUO01000036
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
46090
46167
+
Phe
GAA
[ENA]
¡û
>w020009
AAUO01000031
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
7866
7943
+
Phe
GAA
[ENA]
¡û
>w018652
AATK01000065
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
13233
13161
-
Phe
GAA
[ENA]
¡û
>w018626
AATK01000022
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
2389
2466
+
Phe
GAA
[ENA]
¡û
>w018624
AATK01000022
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
1684
1761
+
Phe
GAA
[ENA]
¡û
>w007691
AAIU01000036
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
23734
23662
-
Phe
GAA
[ENA]
¡û
>w007649
AAIU01000003
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
193734
193811
+
Phe
GAA
[ENA]
¡û
>WENV180310814
OBJT01029000
[OBJT] soil metagenome; soil
218
293
+
Phe
GAA
[ENA]
¢þ
>W08005657
ABIC01000007
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
36652
36580
-
Phe
GAA
[ENA]
¡û
>W08005659
ABIC01000007
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
35267
35195
-
Phe
GAA
[ENA]
¡û
>W08005680
ABIC01000012
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
98341
98269
-
Phe
GAA
[ENA]
¡û
>W141171206
AXZL01000058
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
75203
75278
+
Phe
GAA
[ENA]
¡û
>W141171239
AXZL01000072
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
7810
7885
+
Phe
GAA
[ENA]
¡û
>C08008641
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3649361
3649436
+
Phe
GAA
[Ensembl]
¡û
>C08008643
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3650068
3650143
+
Phe
GAA
[Ensembl]
¡û
>C08008701
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
1282994
1282922
-
Phe
GAA
[Ensembl]
¡û
>W141227844
BALM01000006
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
164229
164154
-
Phe
GAA
[ENA]
¡û
>W141227878
BALM01000058
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
203
128
-
Phe
GAA
[ENA]
¡û
>W141227911
BALN01000021
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
63743
63668
-
Phe
GAA
[ENA]
¡û
>C08010563
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
4266677
4266752
+
Phe
GAA
[Ensembl]
¡û
>C08010629
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
1450793
1450721
-
Phe
GAA
[Ensembl]
¡û
>C08010631
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
1449933
1449861
-
Phe
GAA
[Ensembl]
¡û
>C08010177
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
3882154
3882229
+
Phe
GAA
[Ensembl]
¡û
>C08010247
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
1342670
1342598
-
Phe
GAA
[Ensembl]
¡û
>C08010249
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
1340652
1340580
-
Phe
GAA
[Ensembl]
¡û
>C08010251
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
1339909
1339837
-
Phe
GAA
[Ensembl]
¡û
>WENV182556838
OJDH01000226
[OJDH] seawater metagenome; Sea water
6924
6999
+
Phe
GAA
[ENA]
¢þ
>WENV182560412
OJDU01000632
[OJDU] seawater metagenome; Sea water
7511
7436
-
Phe
GAA
[ENA]
¢þ
>C08009861
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
3965768
3965843
+
Phe
GAA
[Ensembl]
¡û
>C08009928
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
1404547
1404475
-
Phe
GAA
[Ensembl]
¡û
>C08009930
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
1403906
1403834
-
Phe
GAA
[Ensembl]
¡û
>C08009932
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
1403174
1403102
-
Phe
GAA
[Ensembl]
¡û
>W141276556
JADX01000005
Gammaproteobacteria
Shewanella fidelis ATCC BAA-318 [JADX]
513285
513210
-
Phe
GAA
[ENA]
¡û
>W141276591
JADX01000020
Gammaproteobacteria
Shewanella fidelis ATCC BAA-318 [JADX]
118242
118167
-
Phe
GAA
[ENA]
¡û
>W141276813
JAEC01000007
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
105751
105676
-
Phe
GAA
[ENA]
¡û
>W141276840
JAEC01000030
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
61134
61059
-
Phe
GAA
[ENA]
¡û
>W141277047
JAEH01000011
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
42717
42642
-
Phe
GAA
[ENA]
¡û
>W141277084
JAEH01000075
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
2246
2171
-
Phe
GAA
[ENA]
¡û
>C08010757
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4537127
4537202
+
Phe
GAA
[Ensembl]
¡û
>C08010835
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
1669597
1669525
-
Phe
GAA
[Ensembl]
¡û
>C08010837
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
1668690
1668618
-
Phe
GAA
[Ensembl]
¡û
>WENV170023589
BCQL01000141
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
11352
11427
+
Phe
GAA
[ENA]
¢þ
>WENV170023769
BCQL01002795
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2849
2774
-
Phe
GAA
[ENA]
¢þ
>WENV020696
AACY020557355
Marine microbial communities from Global Ocean Sampling (GOS)
7513
7588
+
Phe
GAA
[ENA]
>WENV020700
AACY020557386
Marine microbial communities from Global Ocean Sampling (GOS)
45855
45778
-
Phe
GAA
[ENA]
>WENV020959
AACY020561195
Marine microbial communities from Global Ocean Sampling (GOS)
47827
47752
-
Phe
GAA
[ENA]
>C181016888
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
2157883
2157808
-
Phe
GAA
-
¡û
>C181016890
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
2157142
2157067
-
Phe
GAA
-
¡û
>C181016893
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
1836622
1836547
-
Phe
GAA
-
¡û
>C181057567
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4957242
4957167
-
Phe
GAA
-
¡û
>C181057569
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4956622
4956547
-
Phe
GAA
-
¡û
>C181057571
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4737134
4737059
-
Phe
GAA
-
¡û
>C181061325
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
3103706
3103781
+
Phe
GAA
-
¡û
>C181061370
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
1026515
1026440
-
Phe
GAA
-
¡û
>C181062970
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3382788
3382863
+
Phe
GAA
-
¡û
>C181062972
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3383424
3383499
+
Phe
GAA
-
¡û
>C181063031
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
1116599
1116524
-
Phe
GAA
-
¡û
>C181164466
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
351324
351399
+
Phe
GAA
-
¡û
>C181164468
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
352197
352272
+
Phe
GAA
-
¡û
>C181164470
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
645138
645213
+
Phe
GAA
-
¡û
>C181165391
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
1548305
1548380
+
Phe
GAA
-
¡û
>C181165442
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3930141
3930066
-
Phe
GAA
-
¡û
>C181165444
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3929458
3929383
-
Phe
GAA
-
¡û
>C181214195
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
3914665
3914740
+
Phe
GAA
-
¡û
>C181214244
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
1629590
1629515
-
Phe
GAA
-
¡û
>C181214246
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
1628810
1628735
-
Phe
GAA
-
¡û
>W141520096
JGVI01000072
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
1580
1655
+
Phe
GAA
[ENA]
¡û
>W141520098
JGVI01000072
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
2204
2279
+
Phe
GAA
[ENA]
¡û
>W141520108
JGVI01000078
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
7472
7547
+
Phe
GAA
[ENA]
¡û
>C191156000
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4226654
4226729
+
Phe
GAA
-
¡û
>C191156002
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4300635
4300710
+
Phe
GAA
-
¡û
>C191156004
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4300832
4300907
+
Phe
GAA
-
¡û
>C191173185
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
949313
949388
+
Phe
GAA
-
¡û
>C191173229
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
3067611
3067536
-
Phe
GAA
-
¡û
>C191185863
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
3816809
3816884
+
Phe
GAA
-
¡û
>C191185911
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
1225200
1225125
-
Phe
GAA
-
¡û
>C191187069
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3513617
3513692
+
Phe
GAA
-
¡û
>C191187073
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3514110
3514185
+
Phe
GAA
-
¡û
>C191187075
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3514369
3514444
+
Phe
GAA
-
¡û
>C191187148
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
1403886
1403811
-
Phe
GAA
-
¡û
>C191187211
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
3091515
3091590
+
Phe
GAA
-
¡û
>C191187256
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
985300
985225
-
Phe
GAA
-
¡û
>C191206451
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3454075
3454150
+
Phe
GAA
-
¡û
>C191206453
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3454780
3454855
+
Phe
GAA
-
¡û
>C191206513
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
1148032
1147957
-
Phe
GAA
-
¡û
>W09102865
AAIO01000015
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
78675
78600
-
Phe
GAA
[ENA]
¡û
>W09102867
AAIO01000015
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
77823
77748
-
Phe
GAA
[ENA]
¡û
>W09103115
AAIV01000023
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
48207
48132
-
Phe
GAA
[ENA]
¡û
>W09103155
AAIV01000052
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
7393
7468
+
Phe
GAA
[ENA]
¡û
>W09104056
AALH01000032
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
50771
50696
-
Phe
GAA
[ENA]
¡û
>W09104060
AALH01000034
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
38938
38863
-
Phe
GAA
[ENA]
¡û
>W09104062
AALH01000034
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
38302
38227
-
Phe
GAA
[ENA]
¡û
>W09104482
AALS01000022
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
30491
30416
-
Phe
GAA
[ENA]
¡û
>W09104503
AALS01000048
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
12948
13023
+
Phe
GAA
[ENA]
¡û
>W09104597
AALX01000029
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
20809
20885
+
Phe
GAA
[ENA]
¡û
>W09104629
AALX01000063
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
10408
10333
-
Phe
GAA
[ENA]
¡û
>W1910676713
MCTV01000006
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
140009
139934
-
Phe
GAA
[ENA]
¡û
>W1910676715
MCTV01000006
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
139754
139679
-
Phe
GAA
[ENA]
¡û
>W1910676761
MCTV01000046
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
145326
145251
-
Phe
GAA
[ENA]
¡û
>W1910677469
MCUF01000031
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
11298
11373
+
Phe
GAA
[ENA]
¡û
>W1910677490
MCUF01000048
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
44523
44598
+
Phe
GAA
[ENA]
¡û
>W1910677492
MCUF01000048
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
45170
45245
+
Phe
GAA
[ENA]
¡û
>W1910679635
MCVI01000002
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
6909
6984
+
Phe
GAA
[ENA]
¡û
>W1910679636
MCVI01000003
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
75467
75542
+
Phe
GAA
[ENA]
¡û
>W1910679638
MCVI01000003
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
75720
75795
+
Phe
GAA
[ENA]
¡û
>C09109187
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
3892492
3892567
+
Phe
GAA
[Ensembl]
¡û
>C09109235
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1555782
1555707
-
Phe
GAA
[Ensembl]
¡û
>C09109237
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1555068
1554993
-
Phe
GAA
[Ensembl]
¡û
>C09109819
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
3903042
3903117
+
Phe
GAA
[Ensembl]
¡û
>C09109821
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
4162919
4162994
+
Phe
GAA
[Ensembl]
¡û
>W1910913816
NHRI01000027
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
50206
50131
-
Phe
GAA
[ENA]
¡û
>W1910913819
NHRI01000028
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
47547
47472
-
Phe
GAA
[ENA]
¡û
>W1910913821
NHRI01000028
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
46932
46857
-
Phe
GAA
[ENA]
¡û
>W1910913823
NHRI01000034
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
107
32
-
Phe
GAA
[ENA]
¡û
>W1911551617
OXJV01000001
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
1135896
1135971
+
Phe
GAA
[ENA]
¡û
>W1911551646
OXJV01000012
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
632907
632832
-
Phe
GAA
[ENA]
¡û
>W1911581922
PGVH01000033
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
54177
54102
-
Phe
GAA
[ENA]
¡û
>W1911581956
PGVH01000047
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
95179
95104
-
Phe
GAA
[ENA]
¡û
>W1911581958
PGVH01000047
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
94948
94873
-
Phe
GAA
[ENA]
¡û
>W1911710093
QPQU01000002
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
503956
503881
-
Phe
GAA
[ENA]
¡û
>W1911710117
QPQU01000007
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
277100
277175
+
Phe
GAA
[ENA]
¡û
>W1911710119
QPQU01000007
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
277660
277735
+
Phe
GAA
[ENA]
¡û
>W1810005522
BFBQ01000001
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
384594
384669
+
Phe
GAA
[ENA]
¡û
>W1810005524
BFBQ01000001
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
385487
385562
+
Phe
GAA
[ENA]
¡û
>W1810005526
BFBQ01000001
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
386335
386410
+
Phe
GAA
[ENA]
¡û
>W1810005667
BFBQ01000004
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
58559
58484
-
Phe
GAA
[ENA]
¡û
>W1810155923
PJAZ01000053
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
36251
36326
+
Phe
GAA
[ENA]
¡û
>W1810155925
PJAZ01000053
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
36947
37022
+
Phe
GAA
[ENA]
¡û
>W1810155939
PJAZ01000057
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
245167
245092
-
Phe
GAA
[ENA]
¡û
>W1810156213
PJBE01000012
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
1069510
1069435
-
Phe
GAA
[ENA]
¡û
>W1810156255
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
2510005
2510080
+
Phe
GAA
[ENA]
¡û
>W1810156257
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
2510701
2510776
+
Phe
GAA
[ENA]
¡û
>W1810156649
PJBL01000002
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
233380
233455
+
Phe
GAA
[ENA]
¡û
>W1810156651
PJBL01000002
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
234076
234151
+
Phe
GAA
[ENA]
¡û
>W1810156661
PJBL01000003
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
11285
11360
+
Phe
GAA
[ENA]
¡û
>W1810156778
PJBM01000224
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
10567
10492
-
Phe
GAA
[ENA]
¡û
>W1810156780
PJBM01000224
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
9871
9796
-
Phe
GAA
[ENA]
¡û
>W1810156784
PJBM01000244
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
21459
21384
-
Phe
GAA
[ENA]
¡û
>W1810157736
PJCD01000001
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
743320
743245
-
Phe
GAA
[ENA]
¡û
>W1810157784
PJCD01000003
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
78627
78552
-
Phe
GAA
[ENA]
¡û
>W1810157864
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4506341
4506266
-
Phe
GAA
[ENA]
¡û
>W1810157867
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4114699
4114624
-
Phe
GAA
[ENA]
¡û
>W1810587714
QFLG01000003
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
12687
12612
-
Phe
GAA
[ENA]
¡û
>W1810587716
QFLG01000003
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
12061
11986
-
Phe
GAA
[ENA]
¡û
>W1810587764
QFLG01000044
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
18601
18526
-
Phe
GAA
[ENA]
¡û
>WENV030325
AACY021274149
Marine microbial communities from Global Ocean Sampling (GOS)
625
702
+
Phe
GAA
[ENA]
>W10119019
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
20755
20830
+
Phe
GAA
[ENA]
¡û
>W10119021
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
21460
21535
+
Phe
GAA
[ENA]
¡û
>W10119057
ADVH01000009
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
151560
151485
-
Phe
GAA
[ENA]
¡û
>W10126370
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
541546
541471
-
Phe
GAA
[ENA]
¡û
>W10126372
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
540565
540490
-
Phe
GAA
[ENA]
¡û
>W10126399
AEDE01000004
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
8148
8223
+
Phe
GAA
[ENA]
¡û
>C10112857
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3884708
3884783
+
Phe
GAA
[Ensembl]
¡û
>C10112918
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
1200683
1200608
-
Phe
GAA
[Ensembl]
¡û
>C10112920
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
1199644
1199569
-
Phe
GAA
[Ensembl]
¡û
>W1511302113
JPII01000008
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
64100
64025
-
Phe
GAA
[ENA]
¡û
>W1511302143
JPII01000029
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
76808
76733
-
Phe
GAA
[ENA]
¡û
>C11119420
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
3861065
3861140
+
Phe
GAA
[Ensembl]
¡û
>C11119462
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1557625
1557550
-
Phe
GAA
[Ensembl]
¡û
>C11119464
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1556644
1556569
-
Phe
GAA
[Ensembl]
¡û
>C11119498
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3662290
3662365
+
Phe
GAA
[Ensembl]
¡û
>C11119500
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3663142
3663217
+
Phe
GAA
[Ensembl]
¡û
>C11119556
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
1265665
1265590
-
Phe
GAA
[Ensembl]
¡û
>C11119600
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3718776
3718851
+
Phe
GAA
[Ensembl]
¡û
>C11119602
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3719481
3719556
+
Phe
GAA
[Ensembl]
¡û
>C11119657
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
1318955
1318880
-
Phe
GAA
[Ensembl]
¡û
>W1511403539
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2610903
2610978
+
Phe
GAA
[ENA]
¡û
>C11121537
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3204294
3204369
+
Phe
GAA
[Ensembl]
¡û
>C11121539
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3204978
3205053
+
Phe
GAA
[Ensembl]
¡û
>C11121591
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
1130386
1130311
-
Phe
GAA
[Ensembl]
¡û
>W11125191
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
20755
20830
+
Phe
GAA
[ENA]
¡û
>W11125193
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
21460
21535
+
Phe
GAA
[ENA]
¡û
>W11125229
ADVH01000009
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
151560
151485
-
Phe
GAA
[ENA]
¡û
>W11133631
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
541546
541471
-
Phe
GAA
[ENA]
¡û
>W11133633
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
540565
540490
-
Phe
GAA
[ENA]
¡û
>W11133660
AEDE01000004
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
8148
8223
+
Phe
GAA
[ENA]
¡û
>W11169885
AFOZ01000014
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
502708
502633
-
Phe
GAA
[ENA]
¡û
>W11169929
AFOZ01000038
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
7501
7576
+
Phe
GAA
[ENA]
¡û
>W11178438
AGEX01000004
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
452488
452563
+
Phe
GAA
[ENA]
¡û
>W11178440
AGEX01000004
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
453193
453268
+
Phe
GAA
[ENA]
¡û
>W11178449
AGEX01000005
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
7943
8018
+
Phe
GAA
[ENA]
¡û
>W121103327
AKZL01000043
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
39017
38942
-
Phe
GAA
[ENA]
¡û
>W121103348
AKZL01000137
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
75
1
-
Phe
GAA
[ENA]
¡û
>WENV073768
AACY023937098
Marine microbial communities from Global Ocean Sampling (GOS)
694
771
+
Phe
GAA
[ENA]
>WENV073773
AACY023937266
Marine microbial communities from Global Ocean Sampling (GOS)
630
705
+
Phe
GAA
[ENA]
>WENV073803
AACY023938082
Marine microbial communities from Global Ocean Sampling (GOS)
574
651
+
Phe
GAA
[ENA]
>W1610617860
LGYY01000158
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
48124
48049
-
Phe
GAA
[ENA]
¡û
>W1610617862
LGYY01000158
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
47506
47431
-
Phe
GAA
[ENA]
¡û
>W1610617869
LGYY01000181
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
2102
2027
-
Phe
GAA
[ENA]
¡û
>W1610685450
LKTL01000017
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
110067
109992
-
Phe
GAA
[ENA]
¡û
>W1610685487
LKTL01000113
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
84
159
+
Phe
GAA
[ENA]
¡û
>W1610982640
LWED01000029
Gammaproteobacteria
Shewanella baltica [LWED]
8104
8179
+
Phe
GAA
[ENA]
¡û
>W1610982662
LWED01000060
Gammaproteobacteria
Shewanella baltica [LWED]
192098
192023
-
Phe
GAA
[ENA]
¡û
>W1610982664
LWED01000060
Gammaproteobacteria
Shewanella baltica [LWED]
191225
191150
-
Phe
GAA
[ENA]
¡û
>W1611032809
LZFV01000013
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
260555
260480
-
Phe
GAA
[ENA]
¡û
>W1611032811
LZFV01000013
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
259990
259915
-
Phe
GAA
[ENA]
¡û
>W1611032819
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
529392
529317
-
Phe
GAA
[ENA]
¡û
>W1710597918
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
355739
355664
-
Phe
GAA
[ENA]
¡û
>W1710597951
FTNN01000014
Gammaproteobacteria
Shewanella morhuae [FTNN]
7564
7639
+
Phe
GAA
[ENA]
¡û
>W1710744035
LGYY01000158
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
48124
48049
-
Phe
GAA
[ENA]
¡û
>W1710744037
LGYY01000158
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
47506
47431
-
Phe
GAA
[ENA]
¡û
>W1710744044
LGYY01000181
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
2102
2027
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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