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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.329948 (48 seq.)
>W1711055079
LRUI01000001
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
84348
84273
-
Thr
GGT
[ENA]
¡û
>W1711853450
MYFJ01000064
Gammaproteobacteria
Photorhabdus luminescens [MYFJ]
330
255
-
Thr
GGT
[ENA]
¡û
>C171066099
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
3386909
3386834
-
Thr
GGT
-
¡û
>WENV180376820
OBOM01103185
[OBOM] marine metagenome; Seawater
326
251
-
Thr
GGT
[ENA]
¢þ
>W141254063
CBSU010000135
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae Florida [CBSU]
861
786
-
Thr
GGT
[ENA]
¡û
>W141264859
CCES01000009
Gammaproteobacteria
Serratia symbiotica [CCES]
9114
9189
+
Thr
GGT
[ENA]
¡û
>W141283292
JALA01000021
Gammaproteobacteria
Providencia alcalifaciens PAL-1 [JALA]
4242
4317
+
Thr
GGT
[ENA]
¡û
>W141283306
JALB01000011
Gammaproteobacteria
Providencia alcalifaciens RIMD 1656011 [JALB]
3988
4063
+
Thr
GGT
[ENA]
¡û
>W141461943
JFGV01000068
Gammaproteobacteria
Photorhabdus aegyptia BA1 [JFGV]
26385
26310
-
Thr
GGT
[ENA]
¡û
>WENV170885619
MDTC01205755
[MDTC] marine metagenome; seawater
66900
66825
-
Thr
GGT
[ENA]
¢þ
>C181100297
CP024466
Gammaproteobacteria
Shigella dysenteriae BU53M1 [CP024466]
3454036
3453961
-
Thr
GGT
-
¡û
>C181139989
CP026774
Gammaproteobacteria
Shigella dysenteriae ATCC 13313 [CP026774]
2777716
2777791
+
Thr
GGT
-
¡û
>C181140189
CP026777
Gammaproteobacteria
Shigella dysenteriae 69-3818 [CP026777]
1298715
1298640
-
Thr
GGT
-
¡û
>C181140384
CP026784
Gammaproteobacteria
Shigella dysenteriae 80-547 [CP026784]
749350
749425
+
Thr
GGT
-
¡û
>C181140476
CP026786
Gammaproteobacteria
Shigella dysenteriae NCTC 9718 [CP026786]
2537924
2537999
+
Thr
GGT
-
¡û
>C181143533
CP026878
Gammaproteobacteria
Shigella dysenteriae 07-3308 [CP026878]
3482356
3482431
+
Thr
GGT
-
¡û
>C141008007
CP006736
Gammaproteobacteria
Shigella dysenteriae 1617 [CP006736]
3432453
3432378
-
Thr
GGT
[Ensembl]
¡û
>W1911238336
NSCL01000093
Gammaproteobacteria
Photorhabdus sp. S8-52 [NSCL]
4276
4351
+
Thr
GGT
[ENA]
¡û
>W1911758514
QWSS01000284
Gammaproteobacteria
Shigella dysenteriae DMB SH20028 [QWSS]
3882
3957
+
Thr
GGT
[ENA]
¡û
>W1911760020
QWTS01000271
Gammaproteobacteria
Shigella dysenteriae DMB SH20174 [QWTS]
3882
3957
+
Thr
GGT
[ENA]
¡û
>W1810327537
PUGP01000377
Gammaproteobacteria
Shigella dysenteriae BS983 [PUGP]
3998
4073
+
Thr
GGT
[ENA]
¡û
>W1810327928
PUGU01000611
Gammaproteobacteria
Shigella dysenteriae BS978 [PUGU]
3998
4073
+
Thr
GGT
[ENA]
¡û
>W1810406555
PYMG01000054
Gammaproteobacteria
Photobacterium kishitanii DSMZ 2167 [PYMG]
5672
5747
+
Thr
GGT
[ENA]
¡û
>W1810409848
PYNE01000033
Gammaproteobacteria
Photobacterium kishitanii FS-8.1 [PYNE]
27522
27447
-
Thr
GGT
[ENA]
¡û
>W1810410689
PYNK01000035
Gammaproteobacteria
Photobacterium kishitanii pjapo.1.1 [PYNK]
5668
5743
+
Thr
GGT
[ENA]
¡û
>W1810414479
PYON01000038
Gammaproteobacteria
Photobacterium kishitanii ATCC:BAA-1194 [PYON]
504
429
-
Thr
GGT
[ENA]
¡û
>W1810416180
PYOZ01000041
Gammaproteobacteria
Photobacterium kishitanii A1-4 [PYOZ]
504
429
-
Thr
GGT
[ENA]
¡û
>W1810416322
PYPA01000035
Gammaproteobacteria
Photobacterium kishitanii A1-3 [PYPA]
504
429
-
Thr
GGT
[ENA]
¡û
>W1810416483
PYPB01000033
Gammaproteobacteria
Photobacterium kishitanii A1-2 [PYPB]
5624
5699
+
Thr
GGT
[ENA]
¡û
>W1810416620
PYPC01000041
Gammaproteobacteria
Photobacterium kishitanii A1-1 [PYPC]
5624
5699
+
Thr
GGT
[ENA]
¡û
>W1810887020
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
2229061
2228986
-
Thr
GGT
[ENA]
¡û
>W1810887152
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
301240
301315
+
Thr
GGT
[ENA]
¡û
>C151103896
LN681227
Gammaproteobacteria
Xenorhabdus nematophila AN6/1 [LN681227]
258145
258220
+
Thr
GGT
[Ensembl]
¡û
>C11114169
CP002243
Gammaproteobacteria
Candidatus Moranella endobia PCIT [CP002243]
508152
508077
-
Thr
GGT
[Ensembl]
¡û
>W1511322729
JQDZ01000088
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
330
255
-
Thr
GGT
[ENA]
¡û
>W1511393806
JTAU01000001
Gammaproteobacteria
Providencia stuartii FDAARGOS_87 [JTAU]
2815419
2815494
+
Thr
GGT
[ENA]
¡û
>W11141563
AENX01000241
Gammaproteobacteria
Serratia symbiotica str. Tucson [AENX]
17364
17289
-
Thr
GGT
[ENA]
¡û
>W1511549468
JZSP01000070
Gammaproteobacteria
Photobacterium kishitanii ATCC BAA-1194 [JZSP]
195
270
+
Thr
GGT
[ENA]
¡û
>W1511550416
JZTB01000069
Gammaproteobacteria
Photobacterium kishitanii GCSL-A1-4 [JZTB]
318
243
-
Thr
GGT
[ENA]
¡û
>W1511550509
JZTC01000099
Gammaproteobacteria
Photobacterium kishitanii GCSL-A1-3 [JZTC]
195
270
+
Thr
GGT
[ENA]
¡û
>W1511550565
JZTD01000058
Gammaproteobacteria
Photobacterium kishitanii GCSL-A1-2 [JZTD]
318
243
-
Thr
GGT
[ENA]
¡û
>W1511550643
JZTE01000056
Gammaproteobacteria
Photobacterium kishitanii GCSL-A1-1 [JZTE]
5817
5892
+
Thr
GGT
[ENA]
¡û
>W1511638098
LDNM01000125
Gammaproteobacteria
Xenorhabdus griffiniae BMMCB [LDNM]
26014
25939
-
Thr
GGT
[ENA]
¡û
>C161064825
CP014024
Gammaproteobacteria
Providencia stuartii FDAARGOS_145 [CP014024]
2869114
2869039
-
Thr
GGT
-
¡û
>C161108668
LN999833
Gammaproteobacteria
Candidatus Doolittlea endobia [LN999833]
455959
455884
-
Thr
GGT
[Ensembl]
¡û
>C131009062
CP003881
Gammaproteobacteria
Candidatus Moranella endobia PCVAL [CP003881]
309105
309030
-
Thr
GGT
[Ensembl]
¡û
>W1610896125
LRUI01000001
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
84348
84273
-
Thr
GGT
[ENA]
¡û
>W1710082084
BDGQ01000034
Gammaproteobacteria
Thaumasiovibrio subtropicus [BDGQ]
836
761
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK