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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.329948 (9 seq.)
>WENV170563603
CZCB01022579
[CZCB] anaerobic digester metagenome; anaerobic digester
2186
2111
-
Ala
GGC
[ENA]
¡û
>WENV170563702
CZCB01025951
[CZCB] anaerobic digester metagenome; anaerobic digester
1709
1784
+
Ala
CGC
[ENA]
¡û
>WENV170685760
LFRM01107683
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1151
1076
-
Ala
CGC
[ENA]
¡û
>WENV170687284
LFRM01186842
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
837
912
+
Ala
CGC
[ENA]
¡û
>WENV170689639
LFRM01304955
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5963
5888
-
Ala
GGC
[ENA]
¡û
>W1610605267
LFRT01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
5963
5888
-
Ala
GGC
[ENA]
¡û
>W1610605430
LFRY01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
5963
5888
-
Ala
GGC
[ENA]
¡û
>W1710726587
LFRT01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
5963
5888
-
Ala
GGC
[ENA]
¡û
>W1710726717
LFRY01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
5963
5888
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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