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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.330324 (17 seq.)
>C000528
CP000251
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [CP000251]
1363154
1363229
+
Ala
TGC
[Ensembl]
¡û
>C000554
CP000251
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [CP000251]
2947207
2947132
-
Ala
TGC
[Ensembl]
¡û
>w022419
AAWM01000002
Myxococcota
Anaeromyxobacter sp. Fw109-5 [AAWM]
541534
541457
-
Ala
TGC
[ENA]
¡û
>WENV180356373
OBNK01019545
[OBNK] sediment metagenome; sediment
92
167
+
Ala
TGC
[ENA]
¢þ
>W08007463
ABKC01000032
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [ABKC]
8515
8590
+
Ala
TGC
[ENA]
¡û
>WENV181164422
OEIR01156117
[OEIR] soil metagenome; soil
153
78
-
Ala
TGC
[ENA]
¢þ
>C08000653
CP000769
Myxococcota
Anaeromyxobacter sp. Fw109-5 [CP000769]
3968411
3968339
-
Ala
TGC
[Ensembl]
¡û
>C08000656
CP000769
Myxococcota
Anaeromyxobacter sp. Fw109-5 [CP000769]
2981452
2981380
-
Ala
TGC
[Ensembl]
¡û
>C08000676
CP001131
Myxococcota
Anaeromyxobacter sp. K [CP001131]
1403063
1403138
+
Ala
TGC
[Ensembl]
¡û
>C08000703
CP001131
Myxococcota
Anaeromyxobacter sp. K [CP001131]
3007671
3007599
-
Ala
TGC
[Ensembl]
¡û
>W09101974
AAHD01000053
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [AAHD]
12349
12274
-
Ala
TGC
[ENA]
¡û
>W09107283
ABHX01000065
Myxococcota
Anaeromyxobacter sp. K [ABHX]
8353
8428
+
Ala
TGC
[ENA]
¡û
>W09107288
ABHX01000095
Myxococcota
Anaeromyxobacter sp. K [ABHX]
9251
9326
+
Ala
TGC
[ENA]
¡û
>C09100301
CP001359
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [CP001359]
1497390
1497465
+
Ala
TGC
[Ensembl]
¡û
>C09100328
CP001359
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [CP001359]
3079763
3079688
-
Ala
TGC
[Ensembl]
¡û
>ENV09000689
ABSP01015568
Freshwater sediment metagenome lwMethane_C1
629
554
-
Ala
TGC
[ENA]
¡û
>W1510006510
BAZG01000249
Myxococcota
Anaeromyxobacter sp. PSR-1 [BAZG]
1883
1958
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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